Analysis of interatomic Contacts of Structural Units in PDB entry:
3ORY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ORY entry

There is 1 chain in PDB entry 3ORY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3ARG 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3ORY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
10 12Right-handed 310
Helix 3
3
A
19 24Right-handed 310
Helix 4
4
A
32 43Right-handed alpha
Helix 5
5
A
59 75Right-handed alpha
Helix 6
6
A
87 90Right-handed 310
Helix 7
7
A
91 116Right-handed alpha
Helix 8
8
A
117 125Right-handed alpha
Helix 9
9
A
132 147Right-handed alpha
Helix 10
10
A
156 167Right-handed alpha
Helix 11
11
A
178 183Right-handed alpha
Helix 12
12
A
216 224Right-handed alpha
Helix 13
13
A
226 238Right-handed alpha
Helix 14
14
A
250 262Right-handed alpha
Helix 15
15
A
268 272Right-handed 310
Helix 16
16
A
279 289Right-handed alpha
Helix 17
17
A
304 313Right-handed alpha
Helix 18
18
A
319 338Right-handed alpha
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There are 2 sheets in PDB entry 3ORY. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
187 190anti-parallel
Strand 4
A
172 174parallel
Strand 5
A
27 31parallel
Strand 6
A
78 83parallel
Strand 7
A
150 152parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
206 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il