Analysis of interatomic Contacts of Structural Units in PDB entry:
3OY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OY3 entry

There are 2 chains in PDB entry 3OY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 228GLY 511
B
GLY 228GLY 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3OY3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
238 240Right-handed 310
Helix 2
2
A
249 252Right-handed 310
Helix 3
3
A
263 265Right-handed 310
Helix 4
4
A
279 291Right-handed alpha
Helix 5
5
A
323 330Right-handed alpha
Helix 6
6
A
336 357Right-handed alpha
Helix 7
7
A
365 367Right-handed 310
Helix 8
8
A
373 375Right-handed 310
Helix 9
9
A
383 387Right-handed 310
Helix 10
10
A
402 406Right-handed 310
Helix 11
11
A
407 414Right-handed alpha
Helix 12
12
A
417 434Right-handed alpha
Helix 13
13
A
444 446Right-handed 310
Helix 14
14
A
447 454Right-handed alpha
Helix 15
15
A
465 476Right-handed alpha
Helix 16
16
A
479 483Right-handed 310
Helix 17
17
A
485 509Right-handed alpha
Helix 18
18
B
238 240Right-handed 310
Helix 19
19
B
249 252Right-handed 310
Helix 20
20
B
263 265Right-handed 310
Helix 21
21
B
279 291Right-handed alpha
Helix 22
22
B
323 330Right-handed alpha
Helix 23
23
B
336 357Right-handed alpha
Helix 24
24
B
365 367Right-handed 310
Helix 25
25
B
373 375Right-handed 310
Helix 26
26
B
383 387Right-handed 310
Helix 27
27
B
402 406Right-handed 310
Helix 28
28
B
407 414Right-handed alpha
Helix 29
29
B
417 434Right-handed alpha
Helix 30
30
B
444 446Right-handed 310
Helix 31
31
B
447 454Right-handed alpha
Helix 32
32
B
465 476Right-handed alpha
Helix 33
33
B
479 483Right-handed 310
Helix 34
34
B
485 510Right-handed alpha
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There are 6 sheets in PDB entry 3OY3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
242 247first strand
Strand 2
A
256 261anti-parallel
Strand 3
A
266 272anti-parallel
Strand 4
A
312 316anti-parallel
Strand 5
A
301 305anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
321 322first strand
Strand 2
A
369 371anti-parallel
Strand 3
A
377 379anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
394 396first strand
Strand 2
A
399 401anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
242 247first strand
Strand 2
B
256 261anti-parallel
Strand 3
B
266 272anti-parallel
Strand 4
B
312 316anti-parallel
Strand 5
B
303 305anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
321 322first strand
Strand 2
B
369 371anti-parallel
Strand 3
B
377 379anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
394 396first strand
Strand 2
B
399 401anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il