Analysis of interatomic Contacts of Structural Units in PDB entry:
3OYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OYO entry

There are 2 chains in PDB entry 3OYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3VAL 227
B
 ALA 3VAL 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3OYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 51Right-handed alpha
Helix 2
2
A
52 55Right-handed 310
Helix 3
3
A
104 108Right-handed alpha
Helix 4
4
A
109 112Right-handed 310
Helix 5
5
A
157 161Right-handed alpha
Helix 6
6
A
162 165Right-handed 310
Helix 7
7
A
202 206Right-handed 310
Helix 8
8
A
214 218Right-handed alpha
Helix 9
9
A
219 222Right-handed 310
Helix 10
10
B
47 51Right-handed alpha
Helix 11
11
B
52 55Right-handed 310
Helix 12
12
B
104 108Right-handed alpha
Helix 13
13
B
109 112Right-handed 310
Helix 14
14
B
157 161Right-handed alpha
Helix 15
15
B
162 165Right-handed 310
Helix 16
16
B
202 206Right-handed 310
Helix 17
17
B
214 218Right-handed alpha
Helix 18
18
B
219 222Right-handed 310
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There are 10 sheets in PDB entry 3OYO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
17 22anti-parallel
Strand 3
A
25 30anti-parallel
Strand 4
A
39 46anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
96 103anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
149 156anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
184 189anti-parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
207 208anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
184 189anti-parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
212 213anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
17 22anti-parallel
Strand 3
B
25 30anti-parallel
Strand 4
B
39 46anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
74 79anti-parallel
Strand 3
B
82 87anti-parallel
Strand 4
B
96 103anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 125first strand
Strand 2
B
131 136anti-parallel
Strand 3
B
139 144anti-parallel
Strand 4
B
150 156anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
184 189anti-parallel
Strand 3
B
192 197anti-parallel
Strand 4
B
207 208anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
184 189anti-parallel
Strand 3
B
192 197anti-parallel
Strand 4
B
212 213anti-parallel
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