Analysis of interatomic Contacts of Structural Units in PDB entry:
3P05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P05 entry

There are 5 chains in PDB entry 3P05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1GLN 219
B
 PRO 1GLN 219
C
 PRO 1GLN 219
D
 PRO 1GLN 219
E
 PRO 1GLN 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 3P05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 31Right-handed alpha
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
48 58Right-handed alpha
Helix 4
4
A
62 84Right-handed alpha
Helix 5
5
A
100 105Right-handed alpha
Helix 6
6
A
110 120Right-handed alpha
Helix 7
7
A
125 146Right-handed alpha
Helix 8
8
A
149 153Right-handed 310
Helix 9
9
A
160 175Right-handed alpha
Helix 10
10
A
178 188Right-handed alpha
Helix 11
11
A
188 193Right-handed alpha
Helix 12
12
A
195 205Right-handed alpha
Helix 13
13
A
210 218Right-handed alpha
Helix 14
14
B
16 31Right-handed alpha
Helix 15
15
B
35 44Right-handed alpha
Helix 16
16
B
48 58Right-handed alpha
Helix 17
17
B
62 84Right-handed alpha
Helix 18
18
B
100 105Right-handed alpha
Helix 19
19
B
110 120Right-handed alpha
Helix 20
20
B
125 146Right-handed alpha
Helix 21
21
B
160 175Right-handed alpha
Helix 22
22
B
178 188Right-handed alpha
Helix 23
23
B
188 193Right-handed alpha
Helix 24
24
B
195 205Right-handed alpha
Helix 25
25
B
210 218Right-handed alpha
Helix 26
26
C
16 31Right-handed alpha
Helix 27
27
C
35 44Right-handed alpha
Helix 28
28
C
48 58Right-handed alpha
Helix 29
29
C
62 84Right-handed alpha
Helix 30
30
C
100 105Right-handed alpha
Helix 31
31
C
110 120Right-handed alpha
Helix 32
32
C
125 146Right-handed alpha
Helix 33
33
C
149 153Right-handed 310
Helix 34
34
C
160 175Right-handed alpha
Helix 35
35
C
178 188Right-handed alpha
Helix 36
36
C
188 193Right-handed alpha
Helix 37
37
C
195 206Right-handed alpha
Helix 38
38
C
210 218Right-handed alpha
Helix 39
39
D
16 31Right-handed alpha
Helix 40
40
D
35 44Right-handed alpha
Helix 41
41
D
48 58Right-handed alpha
Helix 42
42
D
62 84Right-handed alpha
Helix 43
43
D
100 105Right-handed alpha
Helix 44
44
D
110 120Right-handed alpha
Helix 45
45
D
125 146Right-handed alpha
Helix 46
46
D
149 153Right-handed 310
Helix 47
47
D
160 175Right-handed alpha
Helix 48
48
D
178 188Right-handed alpha
Helix 49
49
D
188 193Right-handed alpha
Helix 50
50
D
195 206Right-handed alpha
Helix 51
51
D
210 218Right-handed alpha
Helix 52
52
E
16 31Right-handed alpha
Helix 53
53
E
35 44Right-handed alpha
Helix 54
54
E
48 58Right-handed alpha
Helix 55
55
E
62 84Right-handed alpha
Helix 56
56
E
100 105Right-handed alpha
Helix 57
57
E
110 120Right-handed alpha
Helix 58
58
E
125 146Right-handed alpha
Helix 59
59
E
149 153Right-handed 310
Helix 60
60
E
160 175Right-handed alpha
Helix 61
61
E
178 188Right-handed alpha
Helix 62
62
E
188 193Right-handed alpha
Helix 63
63
E
195 206Right-handed alpha
Helix 64
64
E
210 218Right-handed alpha
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There are 2 sheets in PDB entry 3P05. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
10 12anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
11 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il