Analysis of interatomic Contacts of Structural Units in PDB entry:
3P08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P08 entry

There are 2 chains in PDB entry 3P08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 394GLU 658
B
 TRP 395GLU 658
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3P08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
398 400Right-handed 310
Helix 2
2
A
438 451Right-handed alpha
Helix 3
3
A
482 488Right-handed alpha
Helix 4
4
A
494 515Right-handed alpha
Helix 5
5
A
523 525Right-handed 310
Helix 6
6
A
560 564Right-handed 310
Helix 7
7
A
565 572Right-handed alpha
Helix 8
8
A
575 592Right-handed alpha
Helix 9
9
A
602 612Right-handed alpha
Helix 10
10
A
623 633Right-handed alpha
Helix 11
11
A
637 641Right-handed 310
Helix 12
12
A
643 658Right-handed alpha
Helix 13
13
B
398 400Right-handed 310
Helix 14
14
B
438 451Right-handed alpha
Helix 15
15
B
482 488Right-handed alpha
Helix 16
16
B
494 515Right-handed alpha
Helix 17
17
B
523 525Right-handed 310
Helix 18
18
B
560 564Right-handed 310
Helix 19
19
B
565 572Right-handed alpha
Helix 20
20
B
575 592Right-handed alpha
Helix 21
21
B
602 612Right-handed alpha
Helix 22
22
B
623 633Right-handed alpha
Helix 23
23
B
637 641Right-handed 310
Helix 24
24
B
643 657Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3P08. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 410first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
425 431anti-parallel
Strand 4
A
471 475anti-parallel
Strand 5
A
460 464anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
527 529anti-parallel
Strand 3
A
535 537anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 410first strand
Strand 2
B
414 421anti-parallel
Strand 3
B
425 431anti-parallel
Strand 4
B
471 475anti-parallel
Strand 5
B
460 464anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 481first strand
Strand 2
B
527 529anti-parallel
Strand 3
B
535 537anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il