Analysis of interatomic Contacts of Structural Units in PDB entry:
3P1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P1Q entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 3P1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY -4THR 231
P
LYS 369LYS 372
P
VAL 374VAL 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3P1Q. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 16Right-handed alpha
Helix 2
2
A
18 32Right-handed alpha
Helix 3
3
A
37 70Right-handed alpha
Helix 4
4
A
79 105Right-handed alpha
Helix 5
5
A
106 111Right-handed alpha
Helix 6
6
A
113 135Right-handed alpha
Helix 7
7
A
139 162Right-handed alpha
Helix 8
8
A
166 183Right-handed alpha
Helix 9
9
A
186 205Right-handed alpha
Helix 10
10
A
206 208Right-handed 310
Helix 11
11
A
209 231Right-handed alpha
Back to top of page
There are no sheets in PDB entry 3P1Q

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il