Analysis of interatomic Contacts of Structural Units in PDB entry:
3P2Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P2Y entry

There is 1 chain in PDB entry 3P2Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1THR 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3P2Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 30Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
47 54Right-handed alpha
Helix 4
4
A
74 79Right-handed alpha
Helix 5
5
A
96 106Right-handed alpha
Helix 6
6
A
114 116Right-handed 310
Helix 7
7
A
119 125Right-handed 310
Helix 8
8
A
126 147Right-handed alpha
Helix 9
9
A
172 186Right-handed alpha
Helix 10
10
A
195 197Right-handed 310
Helix 11
11
A
198 205Right-handed alpha
Helix 12
12
A
227 243Right-handed alpha
Helix 13
13
A
264 270Right-handed alpha
Helix 14
14
A
281 285Right-handed 310
Helix 15
15
A
310 313Right-handed 310
Helix 16
16
A
314 333Right-handed alpha
Helix 17
17
A
345 352Right-handed alpha
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There are 4 sheets in PDB entry 3P2Y. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
33 36parallel
Strand 3
A
3 6parallel
Strand 4
A
66 68parallel
Strand 5
A
86 89parallel
Strand 6
A
109 112parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
160 161anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
188 192parallel
Strand 3
A
165 169parallel
Strand 4
A
247 250parallel
Strand 5
A
276 279parallel
Strand 6
A
302 305parallel
Strand 7
A
296 299anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 335first strand
Strand 2
A
338 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il