Analysis of interatomic Contacts of Structural Units in PDB entry:
3P6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3P6Y entry

There are 9 chains in PDB entry 3P6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 34	LEU 228
B	GLU 34	HIS 230
C	ILE 81	SER 159
D	ILE 81	SER 159
E	GLU 34	LEU 228
F	GLU 34	HIS 230
G	ARG 80	SER 159
H	LEU 83	PRO 158
I	GLU 34	LEU 219

There are 73 helices in PDB entry 3P6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	41	43	Right-handed 310
Helix 2	2	A	59	75	Right-handed alpha
Helix 3	3	A	116	130	Right-handed alpha
Helix 4	4	A	198	202	Right-handed alpha
Helix 5	5	A	204	213	Right-handed alpha
Helix 6	6	A	214	220	Right-handed alpha
Helix 7	7	B	41	43	Right-handed 310
Helix 8	8	B	59	74	Right-handed alpha
Helix 9	9	B	116	130	Right-handed alpha
Helix 10	10	B	198	202	Right-handed alpha
Helix 11	11	B	204	209	Right-handed alpha
Helix 12	12	B	211	213	Right-handed 310
Helix 13	13	B	214	220	Right-handed alpha
Helix 14	14	C	93	103	Right-handed alpha
Helix 15	15	C	133	144	Right-handed alpha
Helix 16	16	D	93	105	Right-handed alpha
Helix 17	17	D	133	144	Right-handed alpha
Helix 18	18	D	145	147	Right-handed 310
Helix 19	19	E	41	43	Right-handed 310
Helix 20	20	E	59	74	Right-handed alpha
Helix 21	21	E	116	129	Right-handed alpha
Helix 22	22	E	198	202	Right-handed alpha
Helix 23	23	E	204	214	Right-handed alpha
Helix 24	24	E	214	220	Right-handed alpha
Helix 25	25	F	41	43	Right-handed 310
Helix 26	26	F	59	75	Right-handed alpha
Helix 27	27	F	116	129	Right-handed alpha
Helix 28	28	F	198	202	Right-handed alpha
Helix 29	29	F	204	209	Right-handed alpha
Helix 30	30	F	211	213	Right-handed 310
Helix 31	31	F	214	220	Right-handed alpha
Helix 32	32	G	93	105	Right-handed alpha
Helix 33	33	G	133	143	Right-handed alpha
Helix 34	34	H	93	102	Right-handed alpha
Helix 35	35	H	133	138	Right-handed alpha
Helix 36	36	H	138	144	Right-handed alpha
Helix 37	37	H	145	147	Right-handed 310
Helix 38	38	I	41	43	Right-handed 310
Helix 39	39	I	59	74	Right-handed alpha
Helix 40	40	I	116	129	Right-handed alpha
Helix 41	41	I	198	202	Right-handed alpha
Helix 42	42	I	204	213	Right-handed alpha
Helix 43	43	I	214	220	Right-handed alpha
Helix 44	44	J	41	43	Right-handed 310
Helix 45	45	J	59	74	Right-handed alpha
Helix 46	46	J	116	129	Right-handed alpha
Helix 47	47	J	198	202	Right-handed alpha
Helix 48	48	J	204	209	Right-handed alpha
Helix 49	49	J	211	213	Right-handed 310
Helix 50	50	J	214	220	Right-handed alpha
Helix 51	51	K	93	104	Right-handed alpha
Helix 52	52	K	133	144	Right-handed alpha
Helix 53	53	L	93	104	Right-handed alpha
Helix 54	54	L	133	144	Right-handed alpha
Helix 55	55	M	41	43	Right-handed 310
Helix 56	56	M	59	72	Right-handed alpha
Helix 57	57	M	116	130	Right-handed alpha
Helix 58	58	M	198	202	Right-handed alpha
Helix 59	59	M	204	213	Right-handed alpha
Helix 60	60	M	214	220	Right-handed alpha
Helix 61	61	N	41	43	Right-handed 310
Helix 62	62	N	59	72	Right-handed alpha
Helix 63	63	N	116	130	Right-handed alpha
Helix 64	64	N	198	202	Right-handed alpha
Helix 65	65	N	204	209	Right-handed alpha
Helix 66	66	N	211	213	Right-handed 310
Helix 67	67	N	214	220	Right-handed alpha
Helix 68	68	O	93	104	Right-handed alpha
Helix 69	69	O	133	143	Right-handed alpha
Helix 70	70	O	144	147	Right-handed 310
Helix 71	71	P	93	103	Right-handed alpha
Helix 72	72	P	133	144	Right-handed alpha
Helix 73	73	P	145	147	Right-handed 310

There are 41 sheets in PDB entry 3P6Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	223	226	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	50	first strand
Strand 2	A	183	188	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	91	98	anti-parallel
Strand 3	A	77	88	anti-parallel
Strand 4	A	170	178	parallel
Strand 5	A	140	150	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	77	88	anti-parallel
Strand 3	A	91	98	anti-parallel
Strand 4	A	192	197	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	223	226	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	50	first strand
Strand 2	B	183	188	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	91	99	anti-parallel
Strand 3	B	77	88	anti-parallel
Strand 4	B	170	178	parallel
Strand 5	B	140	150	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	77	88	anti-parallel
Strand 3	B	91	99	anti-parallel
Strand 4	B	192	197	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	116	first strand
Strand 2	C	123	130	anti-parallel
Strand 3	C	82	86	anti-parallel
Strand 4	C	155	158	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	116	first strand
Strand 2	D	123	130	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	155	158	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	39	first strand
Strand 2	E	223	226	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	50	first strand
Strand 2	E	183	188	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	105	first strand
Strand 2	E	92	99	anti-parallel
Strand 3	E	77	87	anti-parallel
Strand 4	E	170	178	parallel
Strand 5	E	140	150	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	77	87	anti-parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	192	197	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	39	first strand
Strand 2	F	223	226	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	50	first strand
Strand 2	F	183	188	parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	105	first strand
Strand 2	F	91	99	anti-parallel
Strand 3	F	77	88	anti-parallel
Strand 4	F	170	178	parallel
Strand 5	F	140	150	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	110	first strand
Strand 2	F	77	88	anti-parallel
Strand 3	F	91	99	anti-parallel
Strand 4	F	192	197	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	116	first strand
Strand 2	G	123	131	anti-parallel
Strand 3	G	81	86	anti-parallel
Strand 4	G	155	157	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	116	first strand
Strand 2	H	123	130	anti-parallel
Strand 3	H	84	86	anti-parallel
Strand 4	H	155	157	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	36	39	first strand
Strand 2	I	223	226	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	50	first strand
Strand 2	I	183	188	parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	103	105	first strand
Strand 2	I	91	99	anti-parallel
Strand 3	I	77	88	anti-parallel
Strand 4	I	170	178	parallel
Strand 5	I	140	150	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	108	110	first strand
Strand 2	I	77	88	anti-parallel
Strand 3	I	91	99	anti-parallel
Strand 4	I	192	197	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	39	first strand
Strand 2	J	223	226	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	50	first strand
Strand 2	J	183	188	parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	105	first strand
Strand 2	J	91	99	anti-parallel
Strand 3	J	77	88	anti-parallel
Strand 4	J	170	178	parallel
Strand 5	J	140	150	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	108	110	first strand
Strand 2	J	77	88	anti-parallel
Strand 3	J	91	99	anti-parallel
Strand 4	J	192	197	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	109	116	first strand
Strand 2	K	123	131	anti-parallel
Strand 3	K	82	86	anti-parallel
Strand 4	K	155	157	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	109	116	first strand
Strand 2	L	123	131	anti-parallel
Strand 3	L	81	86	anti-parallel
Strand 4	L	155	158	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	36	39	first strand
Strand 2	M	223	226	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	50	first strand
Strand 2	M	183	188	parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	104	105	first strand
Strand 2	M	91	98	anti-parallel
Strand 3	M	77	88	anti-parallel
Strand 4	M	170	178	parallel
Strand 5	M	140	150	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	108	110	first strand
Strand 2	M	77	88	anti-parallel
Strand 3	M	91	98	anti-parallel
Strand 4	M	192	197	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	36	39	first strand
Strand 2	N	223	226	parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	50	first strand
Strand 2	N	183	188	parallel

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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	103	105	first strand
Strand 2	N	91	99	anti-parallel
Strand 3	N	77	88	anti-parallel
Strand 4	N	170	178	parallel
Strand 5	N	140	150	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	108	110	first strand
Strand 2	N	77	88	anti-parallel
Strand 3	N	91	99	anti-parallel
Strand 4	N	192	197	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	109	116	first strand
Strand 2	O	123	131	anti-parallel
Strand 3	O	82	86	anti-parallel
Strand 4	O	155	158	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	85	86	first strand
Strand 2	P	155	156	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	109	116	first strand
Strand 2	P	123	131	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3P6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
3P6Y