Analysis of interatomic Contacts of Structural Units in PDB entry:
3P71


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P71 entry

There are 2 chains in PDB entry 3P71 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
ASP 20TYR 334
C
ASP 2LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 3P71. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
T
22 43Right-handed alpha
Helix 2
2
T
50 54Right-handed 310
Helix 3
3
T
63 89Right-handed alpha
Helix 4
4
T
103 111Right-handed alpha
Helix 5
5
T
123 137Right-handed alpha
Helix 6
6
T
137 147Right-handed alpha
Helix 7
7
T
174 185Right-handed alpha
Helix 8
8
T
200 204Right-handed 310
Helix 9
9
T
205 220Right-handed alpha
Helix 10
10
T
235 248Right-handed alpha
Helix 11
11
T
254 258Right-handed 310
Helix 12
12
T
260 271Right-handed alpha
Helix 13
13
T
281 287Right-handed alpha
Helix 14
14
T
289 298Right-handed alpha
Helix 15
15
T
304 313Right-handed alpha
Helix 16
16
T
328 332Right-handed 310
Helix 17
17
C
2 19Right-handed alpha
Helix 18
18
C
24 40Right-handed alpha
Helix 19
19
C
61 73Right-handed alpha
Helix 20
20
C
92 107Right-handed alpha
Helix 21
21
C
120 125Right-handed alpha
Helix 22
22
C
128 137Right-handed alpha
Helix 23
23
C
140 151Right-handed alpha
Helix 24
24
C
177 182Right-handed alpha
Helix 25
25
C
193 201Right-handed alpha
Helix 26
26
C
221 233Right-handed alpha
Helix 27
27
C
264 268Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3P71. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
159 161first strand
Strand 2
T
165 169anti-parallel
Strand 3
T
117 122parallel
Strand 4
T
93 97parallel
Strand 5
T
193 198parallel
Strand 6
T
223 230parallel
Strand 7
T
315 322anti-parallel
Strand 8
T
275 280anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 166anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
248 251anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
111 113first strand
Strand 2
C
80 82parallel
Strand 3
C
52 55parallel
Strand 4
C
273 278anti-parallel
Strand 5
C
284 289anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
202 203first strand
Strand 2
C
219 220parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il