Analysis of interatomic Contacts of Structural Units in PDB entry:
3P7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P7M entry

There are 4 chains in PDB entry 3P7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ALA 318
B
 ALA 0ALA 318
C
 MSE 1ALA 318
D
 ASN -1ALA 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 3P7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
38 49Right-handed alpha
Helix 3
3
A
50 55Right-handed alpha
Helix 4
4
A
65 70Right-handed 310
Helix 5
5
A
88 111Right-handed alpha
Helix 6
6
A
122 135Right-handed alpha
Helix 7
7
A
137 139Right-handed 310
Helix 8
8
A
145 162Right-handed alpha
Helix 9
9
A
164 166Right-handed 310
Helix 10
10
A
176 178Right-handed 310
Helix 11
11
A
194 200Right-handed alpha
Helix 12
12
A
204 217Right-handed alpha
Helix 13
13
A
217 227Right-handed alpha
Helix 14
14
A
232 248Right-handed alpha
Helix 15
15
A
263 267Right-handed 310
Helix 16
16
A
292 318Right-handed alpha
Helix 17
17
B
12 25Right-handed alpha
Helix 18
18
B
38 55Right-handed alpha
Helix 19
19
B
65 70Right-handed 310
Helix 20
20
B
88 111Right-handed alpha
Helix 21
21
B
122 135Right-handed alpha
Helix 22
22
B
137 139Right-handed 310
Helix 23
23
B
145 162Right-handed alpha
Helix 24
24
B
164 166Right-handed 310
Helix 25
25
B
176 178Right-handed 310
Helix 26
26
B
194 200Right-handed alpha
Helix 27
27
B
204 217Right-handed alpha
Helix 28
28
B
217 227Right-handed alpha
Helix 29
29
B
232 248Right-handed alpha
Helix 30
30
B
263 267Right-handed 310
Helix 31
31
B
292 318Right-handed alpha
Helix 32
32
C
12 25Right-handed alpha
Helix 33
33
C
38 49Right-handed alpha
Helix 34
34
C
50 55Right-handed alpha
Helix 35
35
C
65 70Right-handed 310
Helix 36
36
C
88 111Right-handed alpha
Helix 37
37
C
122 135Right-handed alpha
Helix 38
38
C
137 139Right-handed 310
Helix 39
39
C
145 162Right-handed alpha
Helix 40
40
C
164 166Right-handed 310
Helix 41
41
C
176 178Right-handed 310
Helix 42
42
C
194 200Right-handed alpha
Helix 43
43
C
204 217Right-handed alpha
Helix 44
44
C
217 227Right-handed alpha
Helix 45
45
C
232 248Right-handed alpha
Helix 46
46
C
263 267Right-handed 310
Helix 47
47
C
292 317Right-handed alpha
Helix 48
48
D
12 25Right-handed alpha
Helix 49
49
D
38 49Right-handed alpha
Helix 50
50
D
50 55Right-handed alpha
Helix 51
51
D
65 70Right-handed 310
Helix 52
52
D
88 111Right-handed alpha
Helix 53
53
D
122 135Right-handed alpha
Helix 54
54
D
137 139Right-handed 310
Helix 55
55
D
145 162Right-handed alpha
Helix 56
56
D
164 166Right-handed 310
Helix 57
57
D
176 178Right-handed 310
Helix 58
58
D
194 200Right-handed alpha
Helix 59
59
D
204 217Right-handed alpha
Helix 60
60
D
217 227Right-handed alpha
Helix 61
61
D
232 248Right-handed alpha
Helix 62
62
D
263 267Right-handed 310
Helix 63
63
D
292 318Right-handed alpha
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There are 14 sheets in PDB entry 3P7M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
29 33parallel
Strand 3
A
5 9parallel
Strand 4
A
74 77parallel
Strand 5
A
115 118parallel
Strand 6
A
141 144parallel
Strand 7
A
252 260anti-parallel
Strand 8
A
271 280anti-parallel
Strand 9
A
283 286anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
188 189anti-parallel
Strand 3
A
192 193anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
180 182anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
29 33parallel
Strand 3
B
5 9parallel
Strand 4
B
74 77parallel
Strand 5
B
115 118parallel
Strand 6
B
141 144parallel
Strand 7
B
252 260anti-parallel
Strand 8
B
271 280anti-parallel
Strand 9
B
283 286anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
188 189anti-parallel
Strand 3
B
192 193anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
180 182anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
29 33parallel
Strand 3
C
5 9parallel
Strand 4
C
74 77parallel
Strand 5
C
115 118parallel
Strand 6
C
141 143parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 169first strand
Strand 2
C
188 189anti-parallel
Strand 3
C
192 193anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
180 182anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 260first strand
Strand 2
C
271 280anti-parallel
Strand 3
C
283 286anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 63first strand
Strand 2
D
29 33parallel
Strand 3
D
5 9parallel
Strand 4
D
74 77parallel
Strand 5
D
115 118parallel
Strand 6
D
141 143parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
168 169first strand
Strand 2
D
188 189anti-parallel
Strand 3
D
192 193anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 174first strand
Strand 2
D
180 182anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 260first strand
Strand 2
D
271 280anti-parallel
Strand 3
D
283 286anti-parallel
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