Analysis of interatomic Contacts of Structural Units in PDB entry:
3P8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P8C entry

There are 5 chains in PDB entry 3P8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5LEU 1250
B
 GLN 7LYS 1121
D
 GLY 21SER 264
E
 ARG 10THR 73
F
 ALA 0VAL 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are145 helices in PDB entry 3P8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 18Right-handed alpha
Helix 2
2
A
58 85Right-handed alpha
Helix 3
3
A
89 93Right-handed 310
Helix 4
4
A
103 144Right-handed alpha
Helix 5
5
A
147 151Right-handed 310
Helix 6
6
A
154 178Right-handed alpha
Helix 7
7
A
178 194Right-handed alpha
Helix 8
8
A
200 216Right-handed alpha
Helix 9
9
A
218 230Right-handed alpha
Helix 10
10
A
233 251Right-handed alpha
Helix 11
11
A
256 275Right-handed alpha
Helix 12
12
A
280 287Right-handed alpha
Helix 13
13
A
291 302Right-handed alpha
Helix 14
14
A
315 321Right-handed alpha
Helix 15
15
A
325 332Right-handed 310
Helix 16
16
A
345 366Right-handed alpha
Helix 17
17
A
383 418Right-handed alpha
Helix 18
18
A
433 439Right-handed alpha
Helix 19
19
A
440 443Right-handed 310
Helix 20
20
A
444 468Right-handed alpha
Helix 21
21
A
468 490Right-handed alpha
Helix 22
22
A
492 502Right-handed alpha
Helix 23
23
A
504 519Right-handed alpha
Helix 24
24
A
530 535Right-handed alpha
Helix 25
25
A
555 571Right-handed alpha
Helix 26
26
A
585 599Right-handed alpha
Helix 27
27
A
601 607Right-handed alpha
Helix 28
28
A
607 616Right-handed alpha
Helix 29
29
A
618 622Right-handed 310
Helix 30
30
A
624 631Right-handed alpha
Helix 31
31
A
639 642Right-handed 310
Helix 32
32
A
643 656Right-handed alpha
Helix 33
33
A
657 661Right-handed 310
Helix 34
34
A
663 669Right-handed alpha
Helix 35
35
A
669 681Right-handed alpha
Helix 36
36
A
684 722Right-handed alpha
Helix 37
37
A
724 734Right-handed alpha
Helix 38
38
A
746 751Right-handed alpha
Helix 39
39
A
763 789Right-handed alpha
Helix 40
40
A
790 793Right-handed 310
Helix 41
41
A
794 814Right-handed alpha
Helix 42
42
A
820 829Right-handed alpha
Helix 43
43
A
837 850Right-handed alpha
Helix 44
44
A
850 854Right-handed alpha
Helix 45
45
A
868 872Right-handed 310
Helix 46
46
A
884 888Right-handed 310
Helix 47
47
A
891 902Right-handed alpha
Helix 48
48
A
903 907Right-handed 310
Helix 49
49
A
910 943Right-handed alpha
Helix 50
50
A
943 956Right-handed alpha
Helix 51
51
A
964 967Right-handed 310
Helix 52
52
A
968 980Right-handed alpha
Helix 53
53
A
980 985Right-handed alpha
Helix 54
54
A
992 1026Right-handed alpha
Helix 55
55
A
1027 1030Right-handed 310
Helix 56
56
A
1042 1054Right-handed alpha
Helix 57
57
A
1055 1057Right-handed 310
Helix 58
58
A
1058 1067Right-handed alpha
Helix 59
59
A
1068 1084Right-handed alpha
Helix 60
60
A
1085 1088Right-handed 310
Helix 61
61
A
1092 1102Right-handed alpha
Helix 62
62
A
1126 1140Right-handed alpha
Helix 63
63
A
1148 1154Right-handed alpha
Helix 64
64
A
1155 1168Right-handed alpha
Helix 65
65
A
1170 1178Right-handed alpha
Helix 66
66
A
1178 1191Right-handed alpha
Helix 67
67
A
1201 1226Right-handed alpha
Helix 68
68
B
7 11Right-handed 310
Helix 69
69
B
12 40Right-handed alpha
Helix 70
70
B
45 49Right-handed 310
Helix 71
71
B
53 64Right-handed alpha
Helix 72
72
B
76 82Right-handed alpha
Helix 73
73
B
82 118Right-handed alpha
Helix 74
74
B
126 149Right-handed alpha
Helix 75
75
B
152 166Right-handed alpha
Helix 76
76
B
174 185Right-handed alpha
Helix 77
77
B
187 196Right-handed alpha
Helix 78
78
B
199 209Right-handed alpha
Helix 79
79
B
210 212Right-handed 310
Helix 80
80
B
213 218Right-handed alpha
Helix 81
81
B
220 227Right-handed alpha
Helix 82
82
B
235 239Right-handed 310
Helix 83
83
B
247 253Right-handed alpha
Helix 84
84
B
254 269Right-handed alpha
Helix 85
85
B
270 276Right-handed alpha
Helix 86
86
B
276 288Right-handed alpha
Helix 87
87
B
303 312Right-handed alpha
Helix 88
88
B
313 318Right-handed 310
Helix 89
89
B
319 360Right-handed alpha
Helix 90
90
B
361 365Right-handed 310
Helix 91
91
B
367 392Right-handed alpha
Helix 92
92
B
404 422Right-handed alpha
Helix 93
93
B
422 437Right-handed alpha
Helix 94
94
B
437 447Right-handed alpha
Helix 95
95
B
453 469Right-handed alpha
Helix 96
96
B
471 477Right-handed alpha
Helix 97
97
B
483 499Right-handed alpha
Helix 98
98
B
505 508Right-handed 310
Helix 99
99
B
509 528Right-handed alpha
Helix 100
100
B
528 538Right-handed alpha
Helix 101
101
B
539 544Right-handed 310
Helix 102
102
B
545 559Right-handed alpha
Helix 103
103
B
559 564Right-handed alpha
Helix 104
104
B
567 573Right-handed alpha
Helix 105
105
B
574 580Right-handed 310
Helix 106
106
B
584 586Right-handed 310
Helix 107
107
B
587 627Right-handed alpha
Helix 108
108
B
628 632Right-handed 310
Helix 109
109
B
633 641Right-handed alpha
Helix 110
110
B
661 665Right-handed 310
Helix 111
111
B
673 690Right-handed alpha
Helix 112
112
B
703 724Right-handed alpha
Helix 113
113
B
735 753Right-handed alpha
Helix 114
114
B
754 756Right-handed 310
Helix 115
115
B
760 772Right-handed alpha
Helix 116
116
B
783 795Right-handed alpha
Helix 117
117
B
795 802Right-handed alpha
Helix 118
118
B
827 832Right-handed alpha
Helix 119
119
B
832 872Right-handed alpha
Helix 120
120
B
873 883Right-handed alpha
Helix 121
121
B
886 895Right-handed alpha
Helix 122
122
B
899 932Right-handed alpha
Helix 123
123
B
932 945Right-handed alpha
Helix 124
124
B
954 965Right-handed alpha
Helix 125
125
B
972 980Right-handed alpha
Helix 126
126
B
988 1007Right-handed alpha
Helix 127
127
B
1008 1016Right-handed 310
Helix 128
128
B
1028 1030Right-handed 310
Helix 129
129
B
1031 1047Right-handed alpha
Helix 130
130
B
1050 1069Right-handed alpha
Helix 131
131
B
1080 1095Right-handed alpha
Helix 132
132
B
1099 1107Right-handed alpha
Helix 133
133
B
1108 1121Right-handed alpha
Helix 134
134
D
25 82Right-handed alpha
Helix 135
135
D
92 97Right-handed alpha
Helix 136
136
D
113 117Right-handed 310
Helix 137
137
D
118 128Right-handed alpha
Helix 138
138
D
133 141Right-handed 310
Helix 139
139
D
146 151Right-handed 310
Helix 140
140
D
155 182Right-handed alpha
Helix 141
142
D
250 261Right-handed alpha
Helix 142
143
E
10 69Right-handed alpha
Helix 143
144
F
0 10Right-handed alpha
Helix 144
145
F
10 40Right-handed alpha
Helix 145
146
F
42 111Right-handed alpha
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There are 9 sheets in PDB entry 3P8C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 308first strand
Strand 2
A
311 314anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
755 757first strand
Strand 2
A
760 762anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 858first strand
Strand 2
A
863 866anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1091first strand
Strand 2
F
114 115anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1195 1196first strand
Strand 2
A
1199 1200anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 296first strand
Strand 2
B
299 302anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
695 697first strand
Strand 2
B
700 702anti-parallel
Strand 3
F
124 125anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
805 808first strand
Strand 2
B
813 816anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1018 1019first strand
Strand 2
B
1024 1025anti-parallel
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