Analysis of interatomic Contacts of Structural Units in PDB entry:
3P8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P8Z entry

There are 2 chains in PDB entry 3P8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 6ARG 262
C
GLU 7ARG 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3P8Z. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
8 20Right-handed alpha
Helix 2
2
A
21 30Right-handed alpha
Helix 3
3
A
38 47Right-handed alpha
Helix 4
4
A
57 68Right-handed alpha
Helix 5
5
A
85 93Right-handed alpha
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
153 169Right-handed alpha
Helix 8
8
A
170 172Right-handed 310
Helix 9
9
A
186 201Right-handed alpha
Helix 10
10
A
226 241Right-handed alpha
Helix 11
11
C
8 19Right-handed alpha
Helix 12
12
C
21 29Right-handed alpha
Helix 13
13
C
38 47Right-handed alpha
Helix 14
14
C
57 67Right-handed alpha
Helix 15
15
C
85 92Right-handed alpha
Helix 16
16
C
120 122Right-handed 310
Helix 17
17
C
131 135Right-handed 310
Helix 18
18
C
153 169Right-handed alpha
Helix 19
19
C
170 172Right-handed 310
Helix 20
20
C
186 201Right-handed alpha
Helix 21
21
C
226 244Right-handed alpha
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There are 4 sheets in PDB entry 3P8Z. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 37first strand
Strand 2
A
250 253parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
124 127first strand
Strand 2
A
97 103parallel
Strand 3
A
75 80parallel
Strand 4
A
142 145parallel
Strand 5
A
176 181parallel
Strand 6
A
217 220anti-parallel
Strand 7
A
203 205anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
34 37first strand
Strand 2
C
250 253parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
124 127first strand
Strand 2
C
97 103parallel
Strand 3
C
75 80parallel
Strand 4
C
142 145parallel
Strand 5
C
176 181parallel
Strand 6
C
217 220anti-parallel
Strand 7
C
203 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il