Analysis of interatomic Contacts of Structural Units in PDB entry:
3PAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PAR entry

There is 1 chain in PDB entry 3PAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 85PHE 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3PAR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
85 108Right-handed alpha
Helix 2
2
A
127 138Right-handed alpha
Helix 3
3
A
147 161Right-handed alpha
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There are 2 sheets in PDB entry 3PAR. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 114first strand
Strand 2
A
117 126anti-parallel
Strand 3
A
222 228anti-parallel
Strand 4
A
141 142anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
178 179first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
204 207anti-parallel
Strand 4
A
213 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il