Analysis of interatomic Contacts of Structural Units in PDB entry:
3PE7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PE7 entry

There is 1 chain in PDB entry 3PE7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3PE7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
147 149Right-handed 310
Helix 2
2
A
154 162Right-handed alpha
Helix 3
3
A
163 165Right-handed 310
Helix 4
4
A
383 388Right-handed 310
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There are 7 sheets in PDB entry 3PE7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
49 54anti-parallel
Strand 5
A
33 34anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
22 25anti-parallel
Strand 3
A
376 381anti-parallel
Strand 4
A
364 369anti-parallel
Strand 5
A
357 358anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
114 119anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 132first strand
Strand 2
A
138 145anti-parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
180 186anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 196first strand
Strand 2
A
199 207anti-parallel
Strand 3
A
218 222anti-parallel
Strand 4
A
229 230anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 245first strand
Strand 2
A
252 258anti-parallel
Strand 3
A
264 269anti-parallel
Strand 4
A
276 282anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 290first strand
Strand 2
A
296 301anti-parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
331 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il