Analysis of interatomic Contacts of Structural Units in PDB entry:
3PG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PG5 entry

There are 4 chains in PDB entry 3PG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 353
B
 MSE 1ASN 352
C
 MSE 1GLU 353
D
 MSE 1GLU 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 3PG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 29Right-handed alpha
Helix 2
2
A
44 49Right-handed alpha
Helix 3
3
A
50 58Right-handed alpha
Helix 4
4
A
65 69Right-handed 310
Helix 5
5
A
70 75Right-handed alpha
Helix 6
6
A
76 79Right-handed 310
Helix 7
7
A
80 85Right-handed alpha
Helix 8
8
A
110 114Right-handed 310
Helix 9
9
A
115 129Right-handed alpha
Helix 10
10
A
131 136Right-handed alpha
Helix 11
11
A
139 151Right-handed alpha
Helix 12
12
A
166 174Right-handed alpha
Helix 13
13
A
186 220Right-handed alpha
Helix 14
14
A
221 223Right-handed 310
Helix 15
15
A
224 229Right-handed alpha
Helix 16
16
A
270 285Right-handed alpha
Helix 17
17
A
334 350Right-handed alpha
Helix 18
18
B
14 28Right-handed alpha
Helix 19
19
B
44 49Right-handed alpha
Helix 20
20
B
50 59Right-handed alpha
Helix 21
21
B
63 75Right-handed alpha
Helix 22
22
B
76 80Right-handed 310
Helix 23
23
B
81 86Right-handed 310
Helix 24
24
B
112 129Right-handed alpha
Helix 25
25
B
131 138Right-handed alpha
Helix 26
26
B
139 151Right-handed alpha
Helix 27
27
B
166 175Right-handed alpha
Helix 28
28
B
186 220Right-handed alpha
Helix 29
29
B
224 230Right-handed alpha
Helix 30
30
B
270 285Right-handed alpha
Helix 31
31
B
334 350Right-handed alpha
Helix 32
32
C
12 29Right-handed alpha
Helix 33
33
C
44 49Right-handed alpha
Helix 34
34
C
50 56Right-handed alpha
Helix 35
35
C
63 75Right-handed alpha
Helix 36
36
C
76 81Right-handed 310
Helix 37
37
C
82 86Right-handed 310
Helix 38
38
C
110 112Right-handed 310
Helix 39
39
C
113 129Right-handed alpha
Helix 40
40
C
131 138Right-handed alpha
Helix 41
41
C
139 151Right-handed alpha
Helix 42
42
C
166 175Right-handed alpha
Helix 43
43
C
186 220Right-handed alpha
Helix 44
44
C
266 269Right-handed 310
Helix 45
45
C
270 285Right-handed alpha
Helix 46
46
C
334 350Right-handed alpha
Helix 47
47
D
12 29Right-handed alpha
Helix 48
48
D
44 49Right-handed alpha
Helix 49
49
D
50 56Right-handed alpha
Helix 50
50
D
67 75Right-handed alpha
Helix 51
51
D
76 79Right-handed 310
Helix 52
52
D
80 85Right-handed alpha
Helix 53
53
D
112 129Right-handed alpha
Helix 54
54
D
131 138Right-handed alpha
Helix 55
55
D
139 151Right-handed alpha
Helix 56
56
D
166 175Right-handed alpha
Helix 57
57
D
186 220Right-handed alpha
Helix 58
58
D
229 233Right-handed 310
Helix 59
59
D
270 283Right-handed alpha
Helix 60
60
D
334 350Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3PG5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
156 160parallel
Strand 3
A
33 37parallel
Strand 4
A
105 107parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 183first strand
Strand 2
A
243 249parallel
Strand 3
A
293 296parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
105 107anti-parallel
Strand 3
B
33 37parallel
Strand 4
B
156 160parallel
Strand 5
B
2 6parallel
Strand 6
B
178 183parallel
Strand 7
B
243 249parallel
Strand 8
B
293 296parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 98first strand
Strand 2
C
105 107anti-parallel
Strand 3
C
33 37parallel
Strand 4
C
156 160parallel
Strand 5
C
2 6parallel
Strand 6
C
178 183parallel
Strand 7
C
243 249parallel
Strand 8
C
292 296parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 6first strand
Strand 2
D
156 160parallel
Strand 3
D
33 37parallel
Strand 4
D
105 107parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
178 183first strand
Strand 2
D
243 250parallel
Strand 3
D
293 297parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il