Analysis of interatomic Contacts of Structural Units in PDB entry:
3PGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PGK entry

There is 1 chain in PDB entry 3PGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3PGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
I
A
37 51Right-handed alpha
Helix 2
II
A
77 87Right-handed alpha
Helix 3
III
A
100 108Right-handed alpha
Helix 4
IV
A
142 152Right-handed alpha
Helix 5
V
A
185 199Right-handed alpha
Helix 6
VI
A
217 226Right-handed alpha
Helix 7
VII
A
237 243Right-handed alpha
Helix 8
IIX
A
246 251Right-handed alpha
Helix 9
IX
A
257 273Right-handed alpha
Helix 10
X
A
315 325Right-handed alpha
Helix 11
XI
A
348 359Right-handed alpha
Helix 12
XII
A
372 380Right-handed alpha
Helix 13
XII
A
393 401Right-handed alpha
Helix 14
XIV
A
406 410Right-handed alpha
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There are 3 sheets in PDB entry 3PGK. Click on sheet of interest to get list of strands forming it: SHC, SHB, SH1,

There are 6 strands in SHC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
113 116parallel
Strand 3
A
58 59parallel
Strand 4
A
17 21parallel
Strand 5
A
157 159parallel
Strand 6
A
181 183parallel
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There are 6 strands in SHB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
231 235parallel
Strand 3
A
205 209parallel
Strand 4
A
331 333parallel
Strand 5
A
366 368parallel
Strand 6
A
387 389parallel
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There are 2 strands in SH1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 298first strand
Strand 2
A
282 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il