Analysis of interatomic Contacts of Structural Units in PDB entry:
3PJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PJF entry

There are 2 chains in PDB entry 3PJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLU 258
B
 GLY 2GLU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3PJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
41 55Right-handed alpha
Helix 3
3
A
67 82Right-handed alpha
Helix 4
4
A
96 101Right-handed 310
Helix 5
5
A
103 108Right-handed alpha
Helix 6
6
A
109 121Right-handed alpha
Helix 7
7
A
121 132Right-handed alpha
Helix 8
8
A
146 150Right-handed 310
Helix 9
9
A
156 178Right-handed alpha
Helix 10
10
A
209 214Right-handed alpha
Helix 11
11
A
221 233Right-handed alpha
Helix 12
12
A
234 238Right-handed 310
Helix 13
13
A
250 254Right-handed 310
Helix 14
14
B
19 31Right-handed alpha
Helix 15
15
B
41 43Right-handed 310
Helix 16
16
B
44 54Right-handed alpha
Helix 17
17
B
67 80Right-handed alpha
Helix 18
18
B
96 100Right-handed 310
Helix 19
19
B
103 108Right-handed alpha
Helix 20
20
B
109 121Right-handed alpha
Helix 21
21
B
121 132Right-handed alpha
Helix 22
22
B
133 135Right-handed 310
Helix 23
23
B
146 150Right-handed 310
Helix 24
24
B
157 178Right-handed alpha
Helix 25
25
B
196 200Right-handed 310
Helix 26
26
B
202 214Right-handed alpha
Helix 27
27
B
221 234Right-handed alpha
Helix 28
28
B
235 238Right-handed 310
Helix 29
29
B
250 254Right-handed 310
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There are 2 sheets in PDB entry 3PJF. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
34 39parallel
Strand 3
A
8 11parallel
Strand 4
A
85 90parallel
Strand 5
A
135 145parallel
Strand 6
A
182 189parallel
Strand 7
A
244 247parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
34 39parallel
Strand 3
B
8 11parallel
Strand 4
B
88 90parallel
Strand 5
B
139 145parallel
Strand 6
B
182 189parallel
Strand 7
B
244 247parallel
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