Analysis of interatomic Contacts of Structural Units in PDB entry:
3PP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PP0 entry

There are 2 chains in PDB entry 3PP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 706ASP 993
B
 ALA 706LEU 1009
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 3PP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
716 718Right-handed 310
Helix 2
2
A
760 775Right-handed alpha
Helix 3
3
A
805 813Right-handed alpha
Helix 4
4
A
818 839Right-handed alpha
Helix 5
5
A
847 849Right-handed 310
Helix 6
6
A
885 889Right-handed 310
Helix 7
7
A
890 897Right-handed alpha
Helix 8
8
A
900 917Right-handed alpha
Helix 9
9
A
927 929Right-handed 310
Helix 10
10
A
930 937Right-handed alpha
Helix 11
11
A
948 959Right-handed alpha
Helix 12
12
A
962 966Right-handed 310
Helix 13
13
A
968 981Right-handed alpha
Helix 14
14
A
982 987Right-handed alpha
Helix 15
15
A
988 993Right-handed 310
Helix 16
16
B
716 718Right-handed 310
Helix 17
17
B
760 776Right-handed alpha
Helix 18
18
B
805 813Right-handed alpha
Helix 19
19
B
818 839Right-handed alpha
Helix 20
20
B
847 849Right-handed 310
Helix 21
21
B
885 889Right-handed 310
Helix 22
22
B
890 897Right-handed alpha
Helix 23
23
B
900 917Right-handed alpha
Helix 24
24
B
927 929Right-handed 310
Helix 25
25
B
930 937Right-handed alpha
Helix 26
26
B
948 959Right-handed alpha
Helix 27
27
B
962 966Right-handed 310
Helix 28
28
B
968 982Right-handed alpha
Helix 29
29
B
982 987Right-handed alpha
Helix 30
30
B
988 992Right-handed 310
Helix 31
31
B
1002 1008Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3PP0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 728first strand
Strand 2
A
732 739anti-parallel
Strand 3
A
748 755anti-parallel
Strand 4
A
794 799anti-parallel
Strand 5
A
785 790anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 842first strand
Strand 2
A
868 869anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
851 855first strand
Strand 2
A
858 861anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
877 878first strand
Strand 2
A
898 899anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
713 714first strand
Strand 2
B
785 789parallel
Strand 3
B
795 799anti-parallel
Strand 4
B
748 755anti-parallel
Strand 5
B
732 739anti-parallel
Strand 6
B
720 729anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
841 842first strand
Strand 2
B
868 869anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
851 855first strand
Strand 2
B
858 861anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
877 878first strand
Strand 2
B
898 899anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il