Analysis of interatomic Contacts of Structural Units in PDB entry:
3PS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PS5 entry

There is 1 chain in PDB entry 3PS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3PS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 22Right-handed alpha
Helix 2
2
A
71 81Right-handed alpha
Helix 3
3
A
116 128Right-handed alpha
Helix 4
4
A
171 175Right-handed 310
Helix 5
5
A
186 197Right-handed alpha
Helix 6
6
A
222 232Right-handed alpha
Helix 7
7
A
242 253Right-handed alpha
Helix 8
8
A
254 258Right-handed 310
Helix 9
9
A
263 274Right-handed 310
Helix 10
10
A
331 342Right-handed alpha
Helix 11
11
A
426 443Right-handed alpha
Helix 12
12
A
457 477Right-handed alpha
Helix 13
13
A
483 493Right-handed alpha
Helix 14
14
A
501 521Right-handed alpha
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There are 5 sheets in PDB entry 3PS5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
61 62anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
132 137parallel
Strand 3
A
145 154anti-parallel
Strand 4
A
162 169anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
132 137parallel
Strand 3
A
211 212parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
481 482anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
301 308anti-parallel
Strand 3
A
320 324anti-parallel
Strand 4
A
449 452parallel
Strand 5
A
346 349parallel
Strand 6
A
407 414parallel
Strand 7
A
390 399anti-parallel
Strand 8
A
377 386anti-parallel
Strand 9
A
371 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il