Analysis of interatomic Contacts of Structural Units in PDB entry:
3PUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PUY entry

There are 4 chains in PDB entry 3PUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 LYS 1SER 374
F
 TRP 10ILE 503
G
 ALA 2GLY 296
A
 ALA 2GLY 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 3PUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
16 32Right-handed alpha
Helix 2
2
E
42 52Right-handed alpha
Helix 3
3
E
66 73Right-handed alpha
Helix 4
4
E
82 87Right-handed alpha
Helix 5
5
E
90 97Right-handed alpha
Helix 6
6
E
131 141Right-handed alpha
Helix 7
7
E
153 162Right-handed alpha
Helix 8
8
E
185 201Right-handed alpha
Helix 9
9
E
209 219Right-handed alpha
Helix 10
10
E
228 230Right-handed 310
Helix 11
11
E
231 238Right-handed alpha
Helix 12
12
E
272 283Right-handed alpha
Helix 13
13
E
286 297Right-handed alpha
Helix 14
14
E
304 312Right-handed alpha
Helix 15
15
E
314 327Right-handed alpha
Helix 16
16
E
335 352Right-handed alpha
Helix 17
17
E
356 372Right-handed alpha
Helix 18
18
F
14 36Right-handed alpha
Helix 19
19
F
40 59Right-handed alpha
Helix 20
20
F
64 79Right-handed alpha
Helix 21
21
F
79 91Right-handed alpha
Helix 22
22
F
101 110Right-handed alpha
Helix 23
23
F
172 179Right-handed alpha
Helix 24
24
F
179 184Right-handed alpha
Helix 25
25
F
261 270Right-handed alpha
Helix 26
26
F
276 308Right-handed alpha
Helix 27
27
F
313 327Right-handed alpha
Helix 28
28
F
328 340Right-handed alpha
Helix 29
29
F
345 354Right-handed alpha
Helix 30
30
F
364 392Right-handed alpha
Helix 31
31
F
393 396Right-handed 310
Helix 32
32
F
397 406Right-handed alpha
Helix 33
33
F
409 417Right-handed alpha
Helix 34
34
F
417 439Right-handed alpha
Helix 35
35
F
440 448Right-handed alpha
Helix 36
36
F
466 476Right-handed alpha
Helix 37
37
F
483 502Right-handed alpha
Helix 38
38
G
10 38Right-handed alpha
Helix 39
39
G
56 64Right-handed alpha
Helix 40
40
G
80 113Right-handed alpha
Helix 41
41
G
117 130Right-handed alpha
Helix 42
42
G
135 151Right-handed alpha
Helix 43
43
G
158 167Right-handed alpha
Helix 44
44
G
170 183Right-handed alpha
Helix 45
45
G
186 195Right-handed alpha
Helix 46
46
G
198 206Right-handed alpha
Helix 47
47
G
207 229Right-handed alpha
Helix 48
48
G
230 237Right-handed alpha
Helix 49
49
G
239 243Right-handed 310
Helix 50
50
G
244 249Right-handed alpha
Helix 51
51
G
250 253Right-handed 310
Helix 52
52
G
259 270Right-handed alpha
Helix 53
53
G
270 281Right-handed alpha
Helix 54
54
G
282 285Right-handed 310
Helix 55
55
A
41 50Right-handed alpha
Helix 56
56
A
71 75Right-handed 310
Helix 57
57
A
91 97Right-handed alpha
Helix 58
58
A
97 103Right-handed alpha
Helix 59
59
A
106 121Right-handed alpha
Helix 60
60
A
123 127Right-handed 310
Helix 61
61
A
130 134Right-handed 310
Helix 62
62
A
135 151Right-handed alpha
Helix 63
63
A
165 184Right-handed alpha
Helix 64
64
A
193 201Right-handed alpha
Helix 65
65
A
217 224Right-handed alpha
Helix 66
66
A
227 234Right-handed alpha
Helix 67
67
A
294 296Right-handed 310
Helix 68
68
A
348 352Right-handed 310
Helix 69
69
B
41 51Right-handed alpha
Helix 70
70
B
71 75Right-handed 310
Helix 71
71
B
91 97Right-handed alpha
Helix 72
72
B
97 103Right-handed alpha
Helix 73
73
B
106 121Right-handed alpha
Helix 74
74
B
123 127Right-handed 310
Helix 75
75
B
130 134Right-handed 310
Helix 76
76
B
135 149Right-handed alpha
Helix 77
77
B
165 184Right-handed alpha
Helix 78
78
B
193 201Right-handed alpha
Helix 79
79
B
217 224Right-handed alpha
Helix 80
80
B
227 234Right-handed alpha
Helix 81
81
B
348 352Right-handed 310
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There are 16 sheets in PDB entry 3PUY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 38first strand
Strand 2
E
7 10parallel
Strand 3
E
59 63parallel
Strand 4
E
258 266anti-parallel
Strand 5
E
106 111anti-parallel
Strand 6
E
301 302anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 38first strand
Strand 2
E
7 10parallel
Strand 3
E
59 63parallel
Strand 4
E
258 266anti-parallel
Strand 5
E
328 329parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
145 147first strand
Strand 2
E
222 227parallel
Strand 3
E
114 118anti-parallel
Strand 4
E
242 245anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
167 171first strand
Strand 2
E
176 182anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
249 250first strand
Strand 2
E
253 254anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
113 121first strand
Strand 2
F
203 209anti-parallel
Strand 3
F
195 198anti-parallel
Strand 4
F
186 189anti-parallel
Strand 5
F
155 162parallel
Strand 6
F
142 146anti-parallel
Strand 7
F
130 137anti-parallel
Strand 8
F
123 127anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
211 213first strand
Strand 2
F
219 221anti-parallel
Strand 3
F
227 231anti-parallel
Strand 4
F
236 239anti-parallel
Strand 5
F
250 251anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
67 68first strand
Strand 2
G
74 75anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 26first strand
Strand 2
A
4 13anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
65 66anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
154 158parallel
Strand 3
A
186 190parallel
Strand 4
A
31 35parallel
Strand 5
A
203 207parallel
Strand 6
A
212 216anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
253 257anti-parallel
Strand 3
A
240 250anti-parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
353 355anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
342 346anti-parallel
Strand 3
A
299 309anti-parallel
Strand 4
A
313 319anti-parallel
Strand 5
A
327 332anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 26first strand
Strand 2
B
4 13anti-parallel
Strand 3
B
57 62anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
154 158parallel
Strand 3
B
186 190parallel
Strand 4
B
31 35parallel
Strand 5
B
203 208parallel
Strand 6
B
211 216anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
254 257anti-parallel
Strand 3
B
240 249anti-parallel
Strand 4
B
281 285anti-parallel
Strand 5
B
353 355anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
342 346anti-parallel
Strand 3
B
299 309anti-parallel
Strand 4
B
313 319anti-parallel
Strand 5
B
327 332anti-parallel
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