Analysis of interatomic Contacts of Structural Units in PDB entry:
3PZU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PZU entry

There are 2 chains in PDB entry 3PZU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 35GLY 331
B
 PRO 35GLY 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3PZU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 40Right-handed alpha
Helix 2
2
A
66 71Right-handed alpha
Helix 3
3
A
72 74Right-handed 310
Helix 4
4
A
75 86Right-handed alpha
Helix 5
5
A
105 107Right-handed 310
Helix 6
6
A
108 123Right-handed alpha
Helix 7
7
A
137 140Right-handed 310
Helix 8
8
A
141 157Right-handed alpha
Helix 9
9
A
179 195Right-handed alpha
Helix 10
10
A
204 209Right-handed alpha
Helix 11
11
A
210 217Right-handed alpha
Helix 12
12
A
236 249Right-handed alpha
Helix 13
13
A
270 284Right-handed alpha
Helix 14
14
A
314 318Right-handed 310
Helix 15
15
A
319 331Right-handed alpha
Helix 16
16
B
35 40Right-handed alpha
Helix 17
17
B
66 71Right-handed alpha
Helix 18
18
B
72 74Right-handed 310
Helix 19
19
B
75 87Right-handed alpha
Helix 20
20
B
107 123Right-handed alpha
Helix 21
21
B
141 157Right-handed alpha
Helix 22
22
B
179 195Right-handed alpha
Helix 23
23
B
204 209Right-handed alpha
Helix 24
24
B
210 216Right-handed alpha
Helix 25
25
B
236 249Right-handed alpha
Helix 26
26
B
270 284Right-handed alpha
Helix 27
27
B
314 318Right-handed 310
Helix 28
28
B
319 331Right-handed alpha
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There are 4 sheets in PDB entry 3PZU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
48 50anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
90 96parallel
Strand 3
A
125 131parallel
Strand 4
A
162 165parallel
Strand 5
A
200 202parallel
Strand 6
A
224 231parallel
Strand 7
A
253 259parallel
Strand 8
A
288 293parallel
Strand 9
A
60 64parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
48 50anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
90 96parallel
Strand 3
B
125 131parallel
Strand 4
B
162 165parallel
Strand 5
B
200 202parallel
Strand 6
B
224 231parallel
Strand 7
B
253 259parallel
Strand 8
B
288 293parallel
Strand 9
B
60 64parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il