Analysis of interatomic Contacts of Structural Units in PDB entry:
3Q19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3Q19 entry

There are 2 chains in PDB entry 3Q19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ASN 228
B
 ARG 7ASP 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 3Q19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 45Right-handed alpha
Helix 2
2
A
60 66Right-handed 310
Helix 3
3
A
85 97Right-handed alpha
Helix 4
4
A
106 120Right-handed alpha
Helix 5
5
A
122 137Right-handed alpha
Helix 6
6
A
140 162Right-handed alpha
Helix 7
7
A
172 184Right-handed alpha
Helix 8
8
A
184 189Right-handed alpha
Helix 9
9
A
190 195Right-handed 310
Helix 10
10
A
197 210Right-handed alpha
Helix 11
11
A
210 217Right-handed alpha
Helix 12
12
A
219 227Right-handed alpha
Helix 13
13
B
32 45Right-handed alpha
Helix 14
14
B
60 66Right-handed 310
Helix 15
15
B
85 97Right-handed alpha
Helix 16
16
B
106 120Right-handed alpha
Helix 17
17
B
122 137Right-handed alpha
Helix 18
18
B
140 162Right-handed alpha
Helix 19
19
B
172 184Right-handed alpha
Helix 20
20
B
184 189Right-handed alpha
Helix 21
21
B
190 195Right-handed 310
Helix 22
22
B
197 209Right-handed alpha
Helix 23
23
B
210 217Right-handed alpha
Helix 24
24
B
219 232Right-handed alpha
Helix 25
25
B
234 239Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 3Q19. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
24 28parallel
Strand 3
A
74 76anti-parallel
Strand 4
A
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
24 28parallel
Strand 3
B
74 76anti-parallel
Strand 4
B
82 83anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il