Analysis of interatomic Contacts of Structural Units in PDB entry:
3QBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QBK entry

There are 3 chains in PDB entry 3QBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17SER 277
B
 GLU 18GLY 276
D
 GLU 18GLY 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3QBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 29Right-handed alpha
Helix 2
2
A
31 57Right-handed alpha
Helix 3
3
A
61 87Right-handed alpha
Helix 4
4
A
121 142Right-handed alpha
Helix 5
5
A
145 169Right-handed alpha
Helix 6
6
A
172 196Right-handed alpha
Helix 7
7
A
196 206Right-handed alpha
Helix 8
8
A
207 232Right-handed alpha
Helix 9
9
A
240 256Right-handed alpha
Helix 10
10
A
256 268Right-handed alpha
Helix 11
11
A
270 275Right-handed alpha
Helix 12
12
B
20 29Right-handed alpha
Helix 13
13
B
31 56Right-handed alpha
Helix 14
14
B
61 87Right-handed alpha
Helix 15
15
B
121 142Right-handed alpha
Helix 16
16
B
145 169Right-handed alpha
Helix 17
17
B
172 196Right-handed alpha
Helix 18
18
B
196 206Right-handed alpha
Helix 19
19
B
207 232Right-handed alpha
Helix 20
20
B
240 256Right-handed alpha
Helix 21
21
B
256 270Right-handed alpha
Helix 22
22
B
270 276Right-handed alpha
Helix 23
23
D
20 29Right-handed alpha
Helix 24
24
D
31 56Right-handed alpha
Helix 25
25
D
61 87Right-handed alpha
Helix 26
26
D
120 142Right-handed alpha
Helix 27
27
D
145 169Right-handed alpha
Helix 28
28
D
172 196Right-handed alpha
Helix 29
29
D
196 206Right-handed alpha
Helix 30
30
D
207 232Right-handed alpha
Helix 31
31
D
240 256Right-handed alpha
Helix 32
32
D
256 270Right-handed alpha
Helix 33
33
D
270 275Right-handed alpha
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There are 3 sheets in PDB entry 3QBK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
117 119anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
117 119anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
117 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il