Analysis of interatomic Contacts of Structural Units in PDB entry:
3QBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QBV entry

There are 4 chains in PDB entry 3QBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 178
B
 ASP 1229LYS 1578
C
 MET 1GLU 178
D
 ASP 1229LYS 1579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3QBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
A
67 72Right-handed 310
Helix 3
3
A
86 96Right-handed alpha
Helix 4
4
A
96 105Right-handed alpha
Helix 5
5
A
116 120Right-handed 310
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
138 149Right-handed alpha
Helix 8
8
A
164 178Right-handed alpha
Helix 9
9
B
1232 1263Right-handed alpha
Helix 10
10
B
1263 1270Right-handed alpha
Helix 11
11
B
1274 1283Right-handed alpha
Helix 12
12
B
1284 1307Right-handed alpha
Helix 13
13
B
1315 1323Right-handed alpha
Helix 14
14
B
1324 1326Right-handed 310
Helix 15
15
B
1327 1350Right-handed alpha
Helix 16
16
B
1350 1361Right-handed alpha
Helix 17
17
B
1362 1367Right-handed 310
Helix 18
18
B
1370 1375Right-handed alpha
Helix 19
19
B
1376 1395Right-handed alpha
Helix 20
20
B
1402 1440Right-handed alpha
Helix 21
21
B
1562 1576Right-handed alpha
Helix 22
22
C
15 25Right-handed alpha
Helix 23
23
C
67 72Right-handed 310
Helix 24
24
C
86 96Right-handed alpha
Helix 25
25
C
96 105Right-handed alpha
Helix 26
26
C
116 120Right-handed 310
Helix 27
27
C
122 132Right-handed alpha
Helix 28
28
C
138 149Right-handed alpha
Helix 29
29
C
164 178Right-handed alpha
Helix 30
30
D
1232 1263Right-handed alpha
Helix 31
31
D
1263 1270Right-handed alpha
Helix 32
32
D
1274 1283Right-handed alpha
Helix 33
33
D
1284 1307Right-handed alpha
Helix 34
34
D
1315 1323Right-handed alpha
Helix 35
35
D
1324 1326Right-handed 310
Helix 36
36
D
1327 1350Right-handed alpha
Helix 37
37
D
1350 1361Right-handed alpha
Helix 38
38
D
1362 1367Right-handed 310
Helix 39
39
D
1370 1375Right-handed alpha
Helix 40
40
D
1376 1395Right-handed alpha
Helix 41
41
D
1402 1439Right-handed alpha
Helix 42
42
D
1563 1576Right-handed alpha
Helix 43
43
D
1577 1579Right-handed 310
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There are 6 sheets in PDB entry 3QBV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
3 10parallel
Strand 4
A
77 83parallel
Strand 5
A
110 115parallel
Strand 6
A
154 156parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1463 1467first strand
Strand 2
B
1479 1483anti-parallel
Strand 3
B
1487 1490anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1492 1493first strand
Strand 2
B
1511 1512anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1525 1527first strand
Strand 2
B
1540 1542anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 46first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
3 9parallel
Strand 4
C
77 83parallel
Strand 5
C
110 115parallel
Strand 6
C
154 156parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1440 1441first strand
Strand 2
D
1512 1514parallel
Strand 3
D
1487 1491anti-parallel
Strand 4
D
1480 1483anti-parallel
Strand 5
D
1463 1467anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il