Analysis of interatomic Contacts of Structural Units in PDB entry:
3QGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QGV entry

There is 1 chain in PDB entry 3QGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3QGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
25 41Right-handed alpha
Helix 3
3
A
55 59Right-handed 310
Helix 4
4
A
85 99Right-handed alpha
Helix 5
5
A
142 146Right-handed 310
Helix 6
6
A
169 177Right-handed alpha
Helix 7
7
A
182 190Right-handed alpha
Helix 8
8
A
199 203Right-handed 310
Helix 9
9
A
204 216Right-handed alpha
Helix 10
10
A
227 239Right-handed alpha
Helix 11
11
A
244 256Right-handed alpha
Helix 12
12
A
259 269Right-handed alpha
Helix 13
13
A
295 306Right-handed alpha
Helix 14
14
A
314 319Right-handed alpha
Helix 15
15
A
322 336Right-handed alpha
Helix 16
16
A
382 385Right-handed 310
Helix 17
17
A
419 422Right-handed 310
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There are 6 sheets in PDB entry 3QGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
44 46parallel
Strand 3
A
102 107parallel
Strand 4
A
194 197parallel
Strand 5
A
219 221parallel
Strand 6
A
241 243parallel
Strand 7
A
281 284parallel
Strand 8
A
309 313parallel
Strand 9
A
12 14parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
64 66anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
125 130anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 346first strand
Strand 2
A
350 355anti-parallel
Strand 3
A
364 369anti-parallel
Strand 4
A
426 431anti-parallel
Strand 5
A
387 391anti-parallel
Strand 6
A
401 404anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 380first strand
Strand 2
A
409 414anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
423 424anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il