Analysis of interatomic Contacts of Structural Units in PDB entry:
3QJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QJM entry

There are 4 chains in PDB entry 3QJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 656ARG 758
B
 GLY 654ARG 758
C
 ASP 642LEU 646
D
 ASP 642LEU 646
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3QJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
709 714Right-handed alpha
Helix 2
2
A
734 745Right-handed alpha
Helix 3
3
B
709 714Right-handed alpha
Helix 4
4
B
734 745Right-handed alpha
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There are 3 sheets in PDB entry 3QJM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 729first strand
Strand 2
A
721 725anti-parallel
Strand 3
A
748 757anti-parallel
Strand 4
A
657 667anti-parallel
Strand 5
B
655 667anti-parallel
Strand 6
B
748 757anti-parallel
Strand 7
B
721 725anti-parallel
Strand 8
B
728 729anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 705first strand
Strand 2
A
676 680anti-parallel
Strand 3
C
643 645anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
700 705first strand
Strand 2
B
676 680anti-parallel
Strand 3
D
643 645anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il