Analysis of interatomic Contacts of Structural Units in PDB entry:
3QJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QJQ entry

There are 3 chains in PDB entry 3QJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 11TRP 562
B
ASP 3GLU 168
C
GLU 2GLY 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3QJQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 37Right-handed alpha
Helix 2
2
A
37 46Right-handed alpha
Helix 3
3
A
51 59Right-handed alpha
Helix 4
4
A
64 77Right-handed alpha
Helix 5
5
A
78 98Right-handed alpha
Helix 6
6
A
102 125Right-handed alpha
Helix 7
7
A
142 173Right-handed alpha
Helix 8
8
A
180 207Right-handed alpha
Helix 9
9
A
207 214Right-handed alpha
Helix 10
10
A
220 233Right-handed alpha
Helix 11
11
A
233 250Right-handed alpha
Helix 12
12
A
250 255Right-handed alpha
Helix 13
13
A
261 276Right-handed alpha
Helix 14
14
A
279 283Right-handed 310
Helix 15
15
A
291 327Right-handed alpha
Helix 16
16
A
334 339Right-handed alpha
Helix 17
17
A
343 367Right-handed alpha
Helix 18
18
A
368 375Right-handed 310
Helix 19
19
A
379 389Right-handed alpha
Helix 20
20
A
391 399Right-handed alpha
Helix 21
21
A
400 410Right-handed alpha
Helix 22
22
A
415 445Right-handed alpha
Helix 23
23
A
452 456Right-handed 310
Helix 24
24
A
460 462Right-handed 310
Helix 25
25
A
463 494Right-handed alpha
Helix 26
26
A
500 504Right-handed 310
Helix 27
27
A
516 525Right-handed alpha
Helix 28
28
A
526 551Right-handed alpha
Helix 29
29
B
3 7Right-handed 310
Helix 30
30
B
8 39Right-handed alpha
Helix 31
31
B
40 45Right-handed 310
Helix 32
32
B
57 61Right-handed 310
Helix 33
33
B
66 69Right-handed 310
Helix 34
34
B
156 159Right-handed 310
Helix 35
35
C
5 34Right-handed alpha
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There are 3 sheets in PDB entry 3QJQ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
71 75first strand
Strand 2
B
78 86anti-parallel
Strand 3
B
89 91anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
71 75first strand
Strand 2
B
78 86anti-parallel
Strand 3
B
102 108parallel
Strand 4
B
133 137anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
95 98first strand
Strand 2
B
161 167parallel
Strand 3
B
143 148anti-parallel
Strand 4
B
114 118anti-parallel
Strand 5
B
124 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il