Analysis of interatomic Contacts of Structural Units in PDB entry:
3QJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QJU entry

There are 3 chains in PDB entry 3QJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11TRP 562
B
 ASP 3GLU 168
C
 GLU 2GLY 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3QJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 37Right-handed alpha
Helix 2
2
A
37 46Right-handed alpha
Helix 3
3
A
51 59Right-handed alpha
Helix 4
4
A
64 98Right-handed alpha
Helix 5
5
A
102 125Right-handed alpha
Helix 6
6
A
142 174Right-handed alpha
Helix 7
7
A
180 207Right-handed alpha
Helix 8
8
A
207 213Right-handed alpha
Helix 9
9
A
220 233Right-handed alpha
Helix 10
10
A
233 250Right-handed alpha
Helix 11
11
A
250 255Right-handed alpha
Helix 12
12
A
261 276Right-handed alpha
Helix 13
13
A
279 283Right-handed 310
Helix 14
14
A
291 306Right-handed alpha
Helix 15
15
A
306 327Right-handed alpha
Helix 16
16
A
333 338Right-handed alpha
Helix 17
17
A
343 368Right-handed alpha
Helix 18
18
A
371 376Right-handed alpha
Helix 19
19
A
379 390Right-handed alpha
Helix 20
20
A
391 410Right-handed alpha
Helix 21
21
A
414 445Right-handed alpha
Helix 22
22
A
452 462Right-handed 310
Helix 23
23
A
463 493Right-handed alpha
Helix 24
24
A
516 525Right-handed alpha
Helix 25
25
A
526 552Right-handed alpha
Helix 26
26
B
5 37Right-handed alpha
Helix 27
27
B
38 45Right-handed 310
Helix 28
28
B
66 69Right-handed 310
Helix 29
29
B
156 159Right-handed 310
Helix 30
30
C
5 33Right-handed alpha
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There are 4 sheets in PDB entry 3QJU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
556 557anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 75first strand
Strand 2
B
78 86anti-parallel
Strand 3
B
89 91anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 75first strand
Strand 2
B
78 86anti-parallel
Strand 3
B
102 108parallel
Strand 4
B
133 138anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
161 167parallel
Strand 3
B
143 148anti-parallel
Strand 4
B
114 118anti-parallel
Strand 5
B
124 127anti-parallel
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