Analysis of interatomic Contacts of Structural Units in PDB entry:
3QVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QVP entry

There is 1 chain in PDB entry 3QVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3GLN 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3QVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 8Right-handed alpha
Helix 2
2
A
11 15Right-handed 310
Helix 3
3
A
28 39Right-handed alpha
Helix 4
4
A
59 64Right-handed alpha
Helix 5
5
A
65 68Right-handed 310
Helix 6
6
A
101 106Right-handed 310
Helix 7
7
A
115 125Right-handed alpha
Helix 8
8
A
132 143Right-handed alpha
Helix 9
9
A
150 157Right-handed alpha
Helix 10
10
A
161 165Right-handed 310
Helix 11
11
A
184 195Right-handed alpha
Helix 12
12
A
227 233Right-handed alpha
Helix 13
13
A
293 301Right-handed alpha
Helix 14
14
A
305 310Right-handed alpha
Helix 15
15
A
311 313Right-handed 310
Helix 16
16
A
340 343Right-handed 310
Helix 17
17
A
354 359Right-handed alpha
Helix 18
18
A
361 372Right-handed alpha
Helix 19
19
A
372 383Right-handed alpha
Helix 20
20
A
388 406Right-handed alpha
Helix 21
21
A
442 446Right-handed 310
Helix 22
22
A
457 476Right-handed alpha
Helix 23
23
A
479 483Right-handed alpha
Helix 24
24
A
490 494Right-handed 310
Helix 25
25
A
499 507Right-handed alpha
Helix 26
26
A
508 510Right-handed 310
Helix 27
27
A
525 529Right-handed 310
Helix 28
28
A
560 582Right-handed alpha
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There are 7 sheets in PDB entry 3QVP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
46 49parallel
Strand 3
A
19 25parallel
Strand 4
A
276 287parallel
Strand 5
A
263 270anti-parallel
Strand 6
A
249 256anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
46 49parallel
Strand 3
A
19 25parallel
Strand 4
A
276 287parallel
Strand 5
A
544 546parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
93 94anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
171 173parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
409 416anti-parallel
Strand 4
A
421 427anti-parallel
Strand 5
A
330 338anti-parallel
Strand 6
A
484 489anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
409 416anti-parallel
Strand 4
A
421 427anti-parallel
Strand 5
A
330 338anti-parallel
Strand 6
A
512 513anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
448 451anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il