Analysis of interatomic Contacts of Structural Units in PDB entry:
3RAW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RAW entry

There are 2 chains in PDB entry 3RAW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 134THR 484
B
 VAL 136THR 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3RAW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
191 212Right-handed alpha
Helix 2
2
A
242 250Right-handed alpha
Helix 3
3
A
256 277Right-handed alpha
Helix 4
4
A
285 287Right-handed 310
Helix 5
5
A
337 341Right-handed 310
Helix 6
6
A
342 347Right-handed alpha
Helix 7
7
A
353 370Right-handed alpha
Helix 8
8
A
378 391Right-handed alpha
Helix 9
9
A
394 401Right-handed alpha
Helix 10
10
A
403 405Right-handed 310
Helix 11
11
A
418 428Right-handed alpha
Helix 12
12
A
430 435Right-handed 310
Helix 13
13
A
439 453Right-handed alpha
Helix 14
14
A
462 467Right-handed alpha
Helix 15
15
A
468 475Right-handed 310
Helix 16
16
A
476 481Right-handed alpha
Helix 17
17
B
177 179Right-handed 310
Helix 18
18
B
191 212Right-handed alpha
Helix 19
19
B
242 250Right-handed alpha
Helix 20
20
B
256 277Right-handed alpha
Helix 21
21
B
285 287Right-handed 310
Helix 22
22
B
337 341Right-handed 310
Helix 23
23
B
342 347Right-handed alpha
Helix 24
24
B
353 370Right-handed alpha
Helix 25
25
B
378 391Right-handed alpha
Helix 26
26
B
394 401Right-handed alpha
Helix 27
27
B
403 405Right-handed 310
Helix 28
28
B
418 428Right-handed alpha
Helix 29
29
B
430 435Right-handed 310
Helix 30
30
B
439 453Right-handed alpha
Helix 31
31
B
462 467Right-handed alpha
Helix 32
32
B
468 475Right-handed 310
Helix 33
33
B
476 481Right-handed alpha
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There are 11 sheets in PDB entry 3RAW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
156 164anti-parallel
Strand 3
A
168 175anti-parallel
Strand 4
A
182 188anti-parallel
Strand 5
A
231 237anti-parallel
Strand 6
A
222 228anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
325 326anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
316 318anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 301first strand
Strand 2
A
306 311anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
411 412anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
144 145anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
156 164anti-parallel
Strand 3
B
168 175anti-parallel
Strand 4
B
182 188anti-parallel
Strand 5
B
231 237anti-parallel
Strand 6
B
222 228anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 280first strand
Strand 2
B
325 326anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
316 318anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 301first strand
Strand 2
B
306 311anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 408first strand
Strand 2
B
411 412anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il