Analysis of interatomic Contacts of Structural Units in PDB entry:
3RFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RFC entry

There is 1 chain in PDB entry 3RFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2VAL 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3RFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 31Right-handed alpha
Helix 2
2
A
108 113Right-handed alpha
Helix 3
3
A
114 123Right-handed alpha
Helix 4
4
A
131 140Right-handed alpha
Helix 5
5
A
140 151Right-handed alpha
Helix 6
6
A
163 167Right-handed alpha
Helix 7
7
A
170 179Right-handed alpha
Helix 8
8
A
200 202Right-handed 310
Helix 9
9
A
203 215Right-handed alpha
Helix 10
10
A
275 294Right-handed alpha
Helix 11
11
A
326 334Right-handed alpha
Helix 12
12
A
338 361Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3RFC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
4 11parallel
Strand 4
A
101 106parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
87 89anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
182 186anti-parallel
Strand 4
A
196 198anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
240 247anti-parallel
Strand 3
A
227 235anti-parallel
Strand 4
A
297 305anti-parallel
Strand 5
A
311 317anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il