Analysis of interatomic Contacts of Structural Units in PDB entry:
3RHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RHF entry

There are 4 chains in PDB entry 3RHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4SER 286
B
 ALA 6SER 286
C
 ALA 6SER 286
D
 ALA 6SER 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3RHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
39 67Right-handed alpha
Helix 3
3
A
84 96Right-handed alpha
Helix 4
4
A
97 99Right-handed 310
Helix 5
5
A
110 115Right-handed alpha
Helix 6
6
A
119 124Right-handed alpha
Helix 7
7
A
138 143Right-handed 310
Helix 8
8
A
144 149Right-handed alpha
Helix 9
9
A
153 174Right-handed alpha
Helix 10
10
A
186 200Right-handed alpha
Helix 11
11
A
201 207Right-handed 310
Helix 12
12
A
208 216Right-handed alpha
Helix 13
13
A
217 233Right-handed alpha
Helix 14
14
A
246 264Right-handed alpha
Helix 15
15
A
275 285Right-handed alpha
Helix 16
16
B
12 17Right-handed alpha
Helix 17
17
B
24 28Right-handed 310
Helix 18
18
B
39 67Right-handed alpha
Helix 19
19
B
84 96Right-handed alpha
Helix 20
20
B
97 99Right-handed 310
Helix 21
21
B
110 115Right-handed alpha
Helix 22
22
B
119 124Right-handed alpha
Helix 23
23
B
138 143Right-handed 310
Helix 24
24
B
144 149Right-handed alpha
Helix 25
25
B
153 174Right-handed alpha
Helix 26
26
B
186 200Right-handed alpha
Helix 27
27
B
201 207Right-handed 310
Helix 28
28
B
208 216Right-handed alpha
Helix 29
29
B
217 233Right-handed alpha
Helix 30
30
B
246 264Right-handed alpha
Helix 31
31
B
275 286Right-handed alpha
Helix 32
32
C
12 17Right-handed alpha
Helix 33
33
C
24 28Right-handed 310
Helix 34
34
C
39 67Right-handed alpha
Helix 35
35
C
84 96Right-handed alpha
Helix 36
36
C
97 99Right-handed 310
Helix 37
37
C
110 115Right-handed alpha
Helix 38
38
C
119 124Right-handed alpha
Helix 39
39
C
138 144Right-handed 310
Helix 40
40
C
153 174Right-handed alpha
Helix 41
41
C
186 200Right-handed alpha
Helix 42
42
C
201 208Right-handed 310
Helix 43
43
C
209 217Right-handed alpha
Helix 44
44
C
217 233Right-handed alpha
Helix 45
45
C
246 265Right-handed alpha
Helix 46
46
C
275 286Right-handed alpha
Helix 47
47
D
12 17Right-handed alpha
Helix 48
48
D
39 67Right-handed alpha
Helix 49
49
D
84 96Right-handed alpha
Helix 50
50
D
97 99Right-handed 310
Helix 51
51
D
110 115Right-handed alpha
Helix 52
52
D
119 124Right-handed alpha
Helix 53
53
D
138 144Right-handed 310
Helix 54
54
D
153 174Right-handed alpha
Helix 55
55
D
186 200Right-handed alpha
Helix 56
56
D
201 207Right-handed 310
Helix 57
57
D
208 217Right-handed alpha
Helix 58
58
D
217 233Right-handed alpha
Helix 59
59
D
246 264Right-handed alpha
Helix 60
60
D
275 285Right-handed alpha
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There are 4 sheets in PDB entry 3RHF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
132 136parallel
Strand 3
A
72 79parallel
Strand 4
A
176 184parallel
Strand 5
A
239 243parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 105first strand
Strand 2
B
132 136parallel
Strand 3
B
72 79parallel
Strand 4
B
176 184parallel
Strand 5
B
239 243parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 105first strand
Strand 2
C
132 136parallel
Strand 3
C
72 79parallel
Strand 4
C
176 184parallel
Strand 5
C
239 243parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 105first strand
Strand 2
D
132 136parallel
Strand 3
D
72 78parallel
Strand 4
D
176 184parallel
Strand 5
D
239 243parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il