Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RJM entry

There are 6 chains in PDB entry 3RJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9GLN 167
B
 PRO 207PRO 303
C
 LEU 9ASP 168
D
 LYS 208PRO 304
E
 VAL 402VAL 404
F
 VAL 402VAL 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3RJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 23Right-handed alpha
Helix 2
2
A
24 26Right-handed 310
Helix 3
3
A
56 71Right-handed alpha
Helix 4
4
A
82 95Right-handed alpha
Helix 5
5
A
96 101Right-handed 310
Helix 6
6
A
128 135Right-handed alpha
Helix 7
7
A
140 144Right-handed 310
Helix 8
8
B
238 251Right-handed alpha
Helix 9
9
B
255 270Right-handed alpha
Helix 10
10
C
15 23Right-handed alpha
Helix 11
11
C
56 71Right-handed alpha
Helix 12
12
C
82 95Right-handed alpha
Helix 13
13
C
96 101Right-handed 310
Helix 14
14
C
128 135Right-handed alpha
Helix 15
15
C
140 144Right-handed 310
Helix 16
16
D
238 251Right-handed alpha
Helix 17
17
D
255 270Right-handed alpha
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There are 6 sheets in PDB entry 3RJM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 79first strand
Strand 2
A
35 41parallel
Strand 3
A
104 110parallel
Strand 4
A
148 153parallel
Strand 5
B
217 221parallel
Strand 6
B
287 290anti-parallel
Strand 7
D
287 290anti-parallel
Strand 8
D
217 221anti-parallel
Strand 9
C
148 153parallel
Strand 10
C
104 110parallel
Strand 11
C
35 41parallel
Strand 12
C
73 79parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
117 119anti-parallel
Strand 3
A
125 127anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
D
210 211anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
230 232anti-parallel
Strand 3
E
403 405anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 114first strand
Strand 2
C
117 119anti-parallel
Strand 3
C
125 127anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
236 237first strand
Strand 2
D
230 232anti-parallel
Strand 3
F
403 405anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il