Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3RJR entry

There are 4 chains in PDB entry 3RJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 0	SER 361
B	LEU 1	SER 361
C	GLY -1	SER 361
D	PRO 0	CYS 256

There are 33 helices in PDB entry 3RJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	0	29	Right-handed alpha
Helix 2	2	A	45	57	Right-handed alpha
Helix 3	3	A	107	115	Right-handed alpha
Helix 4	4	A	171	181	Right-handed alpha
Helix 5	5	A	235	241	Right-handed alpha
Helix 6	6	A	273	278	Right-handed alpha
Helix 7	7	A	307	314	Right-handed alpha
Helix 8	8	B	1	29	Right-handed alpha
Helix 9	9	B	45	57	Right-handed alpha
Helix 10	10	B	70	75	Right-handed alpha
Helix 11	11	B	107	115	Right-handed alpha
Helix 12	12	B	171	181	Right-handed alpha
Helix 13	13	B	235	241	Right-handed alpha
Helix 14	14	B	252	257	Right-handed alpha
Helix 15	15	B	273	278	Right-handed alpha
Helix 16	16	C	1	29	Right-handed alpha
Helix 17	17	C	45	57	Right-handed alpha
Helix 18	18	C	107	115	Right-handed alpha
Helix 19	19	C	171	181	Right-handed alpha
Helix 20	20	C	235	240	Right-handed alpha
Helix 21	21	C	252	257	Right-handed alpha
Helix 22	22	C	273	278	Right-handed alpha
Helix 23	23	C	299	303	Right-handed 310
Helix 24	24	C	306	314	Right-handed alpha
Helix 25	25	D	0	29	Right-handed alpha
Helix 26	26	D	45	57	Right-handed alpha
Helix 27	27	D	107	115	Right-handed alpha
Helix 28	28	D	171	181	Right-handed alpha
Helix 29	29	D	235	241	Right-handed alpha
Helix 30	30	D	252	257	Right-handed alpha
Helix 31	31	D	273	278	Right-handed alpha
Helix 32	32	D	306	313	Right-handed alpha
Helix 33	33	D	314	317	Right-handed 310

There are 22 sheets in PDB entry 3RJR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	166	170	parallel
Strand 3	A	123	129	anti-parallel
Strand 4	A	228	233	anti-parallel
Strand 5	A	77	83	anti-parallel
Strand 6	B	344	355	anti-parallel
Strand 7	B	332	341	anti-parallel
Strand 8	B	282	284	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	186	192	anti-parallel
Strand 3	A	137	144	anti-parallel
Strand 4	A	150	158	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	199	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	D	202	207	anti-parallel
Strand 4	D	194	199	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	292	294	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	A	287	289	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	332	341	anti-parallel
Strand 3	A	344	355	anti-parallel
Strand 4	B	77	83	anti-parallel
Strand 5	B	228	233	anti-parallel
Strand 6	B	123	129	anti-parallel
Strand 7	B	166	170	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	358	361	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	186	192	anti-parallel
Strand 3	B	137	144	anti-parallel
Strand 4	B	150	158	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	199	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	C	202	207	anti-parallel
Strand 4	C	194	199	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	292	294	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	287	289	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	358	359	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	166	170	parallel
Strand 3	C	123	129	anti-parallel
Strand 4	C	228	233	anti-parallel
Strand 5	C	77	83	anti-parallel
Strand 6	D	344	355	anti-parallel
Strand 7	D	332	341	anti-parallel
Strand 8	D	282	284	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	186	192	anti-parallel
Strand 3	C	137	144	anti-parallel
Strand 4	C	150	158	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	C	292	294	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	287	289	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	332	341	anti-parallel
Strand 3	C	344	355	anti-parallel
Strand 4	D	77	83	anti-parallel
Strand 5	D	228	233	anti-parallel
Strand 6	D	123	129	anti-parallel
Strand 7	D	166	170	anti-parallel
Strand 8	D	60	62	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	358	360	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	106	first strand
Strand 2	D	186	192	anti-parallel
Strand 3	D	137	144	anti-parallel
Strand 4	D	150	158	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	267	first strand
Strand 2	D	292	294	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	287	289	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	329	first strand
Strand 2	D	358	361	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3RJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJR