Analysis of interatomic Contacts of Structural Units in PDB entry:
3RMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RMD entry

There are 15 chains in PDB entry 3RMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ASP 902
B
MET 1ASP 902
C
MET 1PHE 901
D
MET 1LEU 897
E
A 6 G 18
F
G 101 C 113
G
C 1 T 3
G
G 5 G 18
H
G 101 A 115
I
C 1 T 3
I
G 5 G 18
J
G 101 A 115
K
C 1 T 3
K
G 5 G 18
L
G 101 A 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are152 helices in PDB entry 3RMD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
64 79Right-handed alpha
Helix 2
2
A
87 97Right-handed alpha
Helix 3
3
A
104 108Right-handed 310
Helix 4
4
A
163 169Right-handed alpha
Helix 5
5
A
170 174Right-handed 310
Helix 6
6
A
179 184Right-handed alpha
Helix 7
7
A
193 208Right-handed alpha
Helix 8
8
A
221 235Right-handed alpha
Helix 9
9
A
235 240Right-handed alpha
Helix 10
10
A
241 243Right-handed 310
Helix 11
11
A
272 281Right-handed alpha
Helix 12
12
A
289 299Right-handed alpha
Helix 13
13
A
311 316Right-handed alpha
Helix 14
14
A
316 339Right-handed alpha
Helix 15
15
A
339 352Right-handed alpha
Helix 16
16
A
354 359Right-handed 310
Helix 17
17
A
360 376Right-handed alpha
Helix 18
18
A
414 424Right-handed alpha
Helix 19
19
A
438 444Right-handed alpha
Helix 20
20
A
469 486Right-handed alpha
Helix 21
21
A
493 495Right-handed 310
Helix 22
22
A
496 501Right-handed alpha
Helix 23
23
A
534 539Right-handed alpha
Helix 24
24
A
542 571Right-handed alpha
Helix 25
25
A
579 609Right-handed alpha
Helix 26
26
A
629 635Right-handed alpha
Helix 27
27
A
637 641Right-handed 310
Helix 28
28
A
643 674Right-handed alpha
Helix 29
29
A
730 734Right-handed 310
Helix 30
30
A
738 755Right-handed alpha
Helix 31
31
A
756 770Right-handed alpha
Helix 32
32
A
771 774Right-handed 310
Helix 33
33
A
788 792Right-handed 310
Helix 34
34
A
802 816Right-handed alpha
Helix 35
35
A
858 866Right-handed alpha
Helix 36
36
A
867 876Right-handed alpha
Helix 37
37
A
876 888Right-handed alpha
Helix 38
38
A
897 901Right-handed 310
Helix 39
39
B
64 79Right-handed alpha
Helix 40
40
B
87 97Right-handed alpha
Helix 41
41
B
104 108Right-handed 310
Helix 42
42
B
163 169Right-handed alpha
Helix 43
43
B
170 174Right-handed 310
Helix 44
44
B
179 184Right-handed alpha
Helix 45
45
B
193 208Right-handed alpha
Helix 46
46
B
221 235Right-handed alpha
Helix 47
47
B
235 240Right-handed alpha
Helix 48
48
B
241 243Right-handed 310
Helix 49
49
B
272 281Right-handed alpha
Helix 50
50
B
289 299Right-handed alpha
Helix 51
51
B
311 316Right-handed alpha
Helix 52
52
B
316 339Right-handed alpha
Helix 53
53
B
339 352Right-handed alpha
Helix 54
54
B
354 359Right-handed 310
Helix 55
55
B
360 376Right-handed alpha
Helix 56
56
B
414 424Right-handed alpha
Helix 57
57
B
438 444Right-handed alpha
Helix 58
58
B
469 490Right-handed alpha
Helix 59
59
B
497 502Right-handed alpha
Helix 60
60
B
523 531Right-handed alpha
Helix 61
61
B
535 539Right-handed 310
Helix 62
62
B
543 548Right-handed alpha
Helix 63
63
B
548 571Right-handed alpha
Helix 64
64
B
579 609Right-handed alpha
Helix 65
65
B
629 635Right-handed alpha
Helix 66
66
B
636 641Right-handed 310
Helix 67
67
B
643 658Right-handed alpha
Helix 68
68
B
658 674Right-handed alpha
Helix 69
69
B
730 734Right-handed 310
Helix 70
70
B
738 755Right-handed alpha
Helix 71
71
B
756 771Right-handed alpha
Helix 72
72
B
772 774Right-handed 310
Helix 73
73
B
788 792Right-handed 310
Helix 74
74
B
802 816Right-handed alpha
Helix 75
75
B
858 866Right-handed alpha
Helix 76
76
B
867 876Right-handed alpha
Helix 77
77
B
876 888Right-handed alpha
Helix 78
78
B
896 901Right-handed 310
Helix 79
79
C
64 79Right-handed alpha
Helix 80
80
C
87 97Right-handed alpha
Helix 81
81
C
104 108Right-handed 310
Helix 82
82
C
163 169Right-handed alpha
Helix 83
83
C
170 174Right-handed 310
Helix 84
84
C
179 184Right-handed alpha
Helix 85
85
C
193 208Right-handed alpha
Helix 86
86
C
221 235Right-handed alpha
Helix 87
87
C
235 240Right-handed alpha
Helix 88
88
C
241 243Right-handed 310
Helix 89
89
C
272 281Right-handed alpha
Helix 90
90
C
289 299Right-handed alpha
Helix 91
91
C
311 316Right-handed alpha
Helix 92
92
C
316 339Right-handed alpha
Helix 93
93
C
339 352Right-handed alpha
Helix 94
94
C
354 359Right-handed 310
Helix 95
95
C
360 376Right-handed alpha
Helix 96
96
C
414 424Right-handed alpha
Helix 97
97
C
438 444Right-handed alpha
Helix 98
98
C
469 495Right-handed alpha
Helix 99
99
C
496 500Right-handed 310
Helix 100
100
C
549 571Right-handed alpha
Helix 101
101
C
579 610Right-handed alpha
Helix 102
102
C
629 635Right-handed alpha
Helix 103
103
C
637 641Right-handed 310
Helix 104
104
C
643 658Right-handed alpha
Helix 105
105
C
658 674Right-handed alpha
Helix 106
106
C
730 734Right-handed 310
Helix 107
107
C
738 755Right-handed alpha
Helix 108
108
C
756 771Right-handed alpha
Helix 109
109
C
772 774Right-handed 310
Helix 110
110
C
788 792Right-handed 310
Helix 111
111
C
802 816Right-handed alpha
Helix 112
112
C
855 866Right-handed alpha
Helix 113
113
C
867 876Right-handed alpha
Helix 114
114
C
876 888Right-handed alpha
Helix 115
115
D
64 79Right-handed alpha
Helix 116
116
D
87 97Right-handed alpha
Helix 117
117
D
104 108Right-handed 310
Helix 118
118
D
125 129Right-handed 310
Helix 119
119
D
163 169Right-handed alpha
Helix 120
120
D
170 174Right-handed 310
Helix 121
121
D
182 184Right-handed 310
Helix 122
122
D
193 209Right-handed alpha
Helix 123
123
D
221 234Right-handed alpha
Helix 124
124
D
235 240Right-handed alpha
Helix 125
125
D
241 243Right-handed 310
Helix 126
126
D
272 282Right-handed alpha
Helix 127
127
D
289 299Right-handed alpha
Helix 128
128
D
316 339Right-handed alpha
Helix 129
129
D
339 352Right-handed alpha
Helix 130
130
D
354 359Right-handed 310
Helix 131
131
D
360 376Right-handed alpha
Helix 132
132
D
414 424Right-handed alpha
Helix 133
133
D
438 444Right-handed alpha
Helix 134
134
D
469 492Right-handed alpha
Helix 135
135
D
496 501Right-handed alpha
Helix 136
136
D
523 531Right-handed alpha
Helix 137
137
D
534 539Right-handed alpha
Helix 138
138
D
542 571Right-handed alpha
Helix 139
139
D
579 609Right-handed alpha
Helix 140
140
D
629 635Right-handed alpha
Helix 141
141
D
637 641Right-handed 310
Helix 142
142
D
643 658Right-handed alpha
Helix 143
143
D
658 675Right-handed alpha
Helix 144
144
D
730 734Right-handed 310
Helix 145
145
D
740 755Right-handed alpha
Helix 146
146
D
756 773Right-handed alpha
Helix 147
147
D
775 779Right-handed 310
Helix 148
148
D
788 790Right-handed 310
Helix 149
149
D
802 815Right-handed alpha
Helix 150
150
D
858 866Right-handed alpha
Helix 151
151
D
867 876Right-handed alpha
Helix 152
152
D
876 887Right-handed alpha
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There are 39 sheets in PDB entry 3RMD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 11first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
26 31anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 40first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
49 51anti-parallel
Strand 4
A
378 379parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 191first strand
Strand 2
A
145 151parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
110 116anti-parallel
Strand 5
A
212 214parallel
Strand 6
A
269 270parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
153 154first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
248 254first strand
Strand 2
A
259 265anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
402 403first strand
Strand 2
A
700 704anti-parallel
Strand 3
A
707 715anti-parallel
Strand 4
A
683 689anti-parallel
Strand 5
A
407 412anti-parallel
Strand 6
A
624 628anti-parallel
Strand 7
A
617 621anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
402 403first strand
Strand 2
A
700 704anti-parallel
Strand 3
A
707 715anti-parallel
Strand 4
A
718 728anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
430 433first strand
Strand 2
A
461 463anti-parallel
Strand 3
A
455 456anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
781 784first strand
Strand 2
A
829 834anti-parallel
Strand 3
A
845 849anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 11first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
26 31anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 40first strand
Strand 2
B
56 61anti-parallel
Strand 3
B
49 51anti-parallel
Strand 4
B
378 379parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
186 191first strand
Strand 2
B
145 151parallel
Strand 3
B
133 140anti-parallel
Strand 4
B
110 117anti-parallel
Strand 5
B
212 214parallel
Strand 6
B
269 270parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
153 154first strand
Strand 2
B
157 158anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
248 251first strand
Strand 2
B
262 265anti-parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
402 403first strand
Strand 2
B
700 704anti-parallel
Strand 3
B
707 715anti-parallel
Strand 4
B
683 689anti-parallel
Strand 5
B
407 412anti-parallel
Strand 6
B
624 628anti-parallel
Strand 7
B
617 621anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
402 403first strand
Strand 2
B
700 704anti-parallel
Strand 3
B
707 715anti-parallel
Strand 4
B
718 728anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
430 433first strand
Strand 2
B
461 463anti-parallel
Strand 3
B
455 457anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
781 784first strand
Strand 2
B
829 834anti-parallel
Strand 3
B
845 849anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 11first strand
Strand 2
C
14 20anti-parallel
Strand 3
C
26 31anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
36 40first strand
Strand 2
C
56 61anti-parallel
Strand 3
C
49 51anti-parallel
Strand 4
C
378 379parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
186 187first strand
Strand 2
C
145 151parallel
Strand 3
C
190 191parallel
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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
186 187first strand
Strand 2
C
145 151parallel
Strand 3
C
133 140anti-parallel
Strand 4
C
110 117anti-parallel
Strand 5
C
212 214parallel
Strand 6
C
269 270parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
153 154first strand
Strand 2
C
157 158anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
248 251first strand
Strand 2
C
262 265anti-parallel
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There are 7 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
402 403first strand
Strand 2
C
700 704anti-parallel
Strand 3
C
707 715anti-parallel
Strand 4
C
683 689anti-parallel
Strand 5
C
407 412anti-parallel
Strand 6
C
624 628anti-parallel
Strand 7
C
617 621anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
402 403first strand
Strand 2
C
700 704anti-parallel
Strand 3
C
707 715anti-parallel
Strand 4
C
718 728anti-parallel
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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
430 433first strand
Strand 2
C
461 463anti-parallel
Strand 3
C
455 457anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
781 784first strand
Strand 2
C
829 834anti-parallel
Strand 3
C
845 849anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 11first strand
Strand 2
D
14 20anti-parallel
Strand 3
D
26 31anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 40first strand
Strand 2
D
56 61anti-parallel
Strand 3
D
49 51anti-parallel
Strand 4
D
378 379parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
110 112first strand
Strand 2
D
212 214parallel
Strand 3
D
269 270parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
115 116first strand
Strand 2
D
135 140anti-parallel
Strand 3
D
145 151anti-parallel
Strand 4
D
186 191parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
248 251first strand
Strand 2
D
262 265anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
254 255first strand
Strand 2
D
258 259anti-parallel
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There are 7 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
402 403first strand
Strand 2
D
700 704anti-parallel
Strand 3
D
707 715anti-parallel
Strand 4
D
683 689anti-parallel
Strand 5
D
407 412anti-parallel
Strand 6
D
624 628anti-parallel
Strand 7
D
617 621anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
402 403first strand
Strand 2
D
700 704anti-parallel
Strand 3
D
707 715anti-parallel
Strand 4
D
718 728anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
430 433first strand
Strand 2
D
461 463anti-parallel
Strand 3
D
455 457anti-parallel
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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
781 784first strand
Strand 2
D
829 834anti-parallel
Strand 3
D
845 849anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
792 793first strand
Strand 2
D
796 797anti-parallel
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