Analysis of interatomic Contacts of Structural Units in PDB entry:
3ROD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ROD entry

There are 4 chains in PDB entry 3ROD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 261
B
 SER 3SER 261
C
 SER 3SER 261
D
 PHE 5SER 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 3ROD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 15Right-handed alpha
Helix 2
2
A
16 26Right-handed alpha
Helix 3
3
A
32 50Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
73 76Right-handed 310
Helix 6
6
A
87 99Right-handed alpha
Helix 7
7
A
107 118Right-handed alpha
Helix 8
8
A
123 133Right-handed alpha
Helix 9
9
A
165 170Right-handed alpha
Helix 10
10
A
172 185Right-handed alpha
Helix 11
11
A
217 227Right-handed alpha
Helix 12
12
B
7 15Right-handed alpha
Helix 13
13
B
16 26Right-handed alpha
Helix 14
14
B
32 51Right-handed alpha
Helix 15
15
B
68 72Right-handed 310
Helix 16
16
B
73 76Right-handed 310
Helix 17
17
B
87 99Right-handed alpha
Helix 18
18
B
107 118Right-handed alpha
Helix 19
19
B
123 134Right-handed alpha
Helix 20
20
B
165 170Right-handed alpha
Helix 21
21
B
172 184Right-handed alpha
Helix 22
22
B
217 228Right-handed alpha
Helix 23
23
C
9 15Right-handed alpha
Helix 24
24
C
16 25Right-handed alpha
Helix 25
25
C
32 51Right-handed alpha
Helix 26
26
C
68 72Right-handed 310
Helix 27
27
C
73 76Right-handed 310
Helix 28
28
C
87 100Right-handed alpha
Helix 29
29
C
107 118Right-handed alpha
Helix 30
30
C
123 134Right-handed alpha
Helix 31
31
C
165 170Right-handed 310
Helix 32
32
C
172 185Right-handed alpha
Helix 33
33
C
217 228Right-handed alpha
Helix 34
34
D
8 15Right-handed alpha
Helix 35
35
D
16 25Right-handed alpha
Helix 36
36
D
32 51Right-handed alpha
Helix 37
37
D
68 72Right-handed 310
Helix 38
38
D
73 76Right-handed 310
Helix 39
39
D
87 99Right-handed alpha
Helix 40
40
D
107 118Right-handed alpha
Helix 41
41
D
123 134Right-handed alpha
Helix 42
42
D
165 169Right-handed 310
Helix 43
43
D
172 185Right-handed alpha
Helix 44
44
D
217 228Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3ROD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 140first strand
Strand 2
A
78 85parallel
Strand 3
A
56 62parallel
Strand 4
A
157 163parallel
Strand 5
A
187 198parallel
Strand 6
A
252 259anti-parallel
Strand 7
A
230 238anti-parallel
Strand 8
B
230 238anti-parallel
Strand 9
B
252 259anti-parallel
Strand 10
B
187 198anti-parallel
Strand 11
B
157 163parallel
Strand 12
B
56 62parallel
Strand 13
B
78 85parallel
Strand 14
B
135 140parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
209 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 206first strand
Strand 2
B
209 212anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 140first strand
Strand 2
C
78 85parallel
Strand 3
C
56 62parallel
Strand 4
C
157 163parallel
Strand 5
C
187 198parallel
Strand 6
C
252 259anti-parallel
Strand 7
C
230 238anti-parallel
Strand 8
D
232 238anti-parallel
Strand 9
D
252 257anti-parallel
Strand 10
D
187 198anti-parallel
Strand 11
D
157 163parallel
Strand 12
D
56 62parallel
Strand 13
D
78 85parallel
Strand 14
D
135 140parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
203 206first strand
Strand 2
D
209 212anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il