Analysis of interatomic Contacts of Structural Units in PDB entry:
3RPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RPF entry

There are 4 chains in PDB entry 3RPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LEU 144
B
 ALA 0ALA 145
C
 MSE 1GLY 74
D
 VAL 3GLY 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3RPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
51 69Right-handed alpha
Helix 3
3
A
97 116Right-handed alpha
Helix 4
4
A
132 135Right-handed 310
Helix 5
5
B
10 25Right-handed alpha
Helix 6
6
B
51 69Right-handed alpha
Helix 7
7
B
97 116Right-handed alpha
Helix 8
8
C
22 32Right-handed alpha
Helix 9
9
D
26 31Right-handed alpha
Helix 10
10
D
32 37Right-handed 310
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There are 6 sheets in PDB entry 3RPF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
71 83parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
29 36anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
71 83parallel
Strand 3
A
45 50anti-parallel
Strand 4
A
118 124anti-parallel
Strand 5
A
127 130anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
72 83parallel
Strand 3
B
87 95anti-parallel
Strand 4
B
29 36anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
72 83parallel
Strand 3
B
43 50anti-parallel
Strand 4
B
118 124anti-parallel
Strand 5
B
127 130anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 19first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
64 68parallel
Strand 4
C
44 47anti-parallel
Strand 5
C
51 52anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
64 68parallel
Strand 3
D
44 47anti-parallel
Strand 4
D
51 52anti-parallel
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