Analysis of interatomic Contacts of Structural Units in PDB entry:
3RYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RYT entry

There are 3 chains in PDB entry 3RYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1278MET 1890
B
 LYS 1277ALA 1891
C
 GLN 2VAL 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 3RYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1283 1290Right-handed alpha
Helix 2
2
A
1290 1308Right-handed alpha
Helix 3
3
A
1321 1331Right-handed alpha
Helix 4
4
A
1346 1361Right-handed alpha
Helix 5
5
A
1362 1376Right-handed alpha
Helix 6
6
A
1380 1393Right-handed alpha
Helix 7
7
A
1394 1397Right-handed 310
Helix 8
8
A
1398 1420Right-handed alpha
Helix 9
9
A
1423 1427Right-handed 310
Helix 10
10
A
1433 1447Right-handed alpha
Helix 11
11
A
1449 1454Right-handed alpha
Helix 12
12
A
1455 1471Right-handed alpha
Helix 13
13
A
1525 1538Right-handed alpha
Helix 14
14
A
1584 1589Right-handed alpha
Helix 15
15
A
1678 1688Right-handed alpha
Helix 16
16
A
1688 1700Right-handed alpha
Helix 17
17
A
1710 1726Right-handed alpha
Helix 18
18
A
1731 1741Right-handed alpha
Helix 19
19
A
1747 1754Right-handed alpha
Helix 20
20
A
1764 1783Right-handed alpha
Helix 21
21
A
1794 1800Right-handed alpha
Helix 22
22
A
1803 1821Right-handed alpha
Helix 23
23
A
1825 1839Right-handed alpha
Helix 24
24
A
1845 1858Right-handed alpha
Helix 25
25
A
1860 1868Right-handed alpha
Helix 26
26
A
1871 1877Right-handed alpha
Helix 27
27
A
1878 1890Right-handed alpha
Helix 28
28
B
1279 1310Right-handed alpha
Helix 29
29
B
1321 1331Right-handed alpha
Helix 30
30
B
1349 1362Right-handed alpha
Helix 31
31
B
1362 1375Right-handed alpha
Helix 32
32
B
1380 1391Right-handed alpha
Helix 33
33
B
1394 1397Right-handed 310
Helix 34
34
B
1398 1419Right-handed alpha
Helix 35
35
B
1433 1447Right-handed alpha
Helix 36
36
B
1449 1454Right-handed alpha
Helix 37
37
B
1455 1472Right-handed alpha
Helix 38
38
B
1525 1538Right-handed alpha
Helix 39
39
B
1675 1680Right-handed alpha
Helix 40
40
B
1681 1688Right-handed alpha
Helix 41
41
B
1688 1700Right-handed alpha
Helix 42
42
B
1710 1726Right-handed alpha
Helix 43
43
B
1731 1743Right-handed alpha
Helix 44
44
B
1746 1754Right-handed alpha
Helix 45
45
B
1755 1758Right-handed 310
Helix 46
46
B
1764 1783Right-handed alpha
Helix 47
47
B
1795 1800Right-handed alpha
Helix 48
48
B
1803 1821Right-handed alpha
Helix 49
49
B
1825 1840Right-handed alpha
Helix 50
50
B
1845 1859Right-handed alpha
Helix 51
51
B
1861 1869Right-handed alpha
Helix 52
52
B
1871 1877Right-handed alpha
Helix 53
53
B
1878 1891Right-handed alpha
Helix 54
54
C
15 25Right-handed alpha
Helix 55
55
C
67 72Right-handed 310
Helix 56
56
C
86 96Right-handed alpha
Helix 57
57
C
96 105Right-handed alpha
Helix 58
58
C
116 120Right-handed 310
Helix 59
59
C
123 131Right-handed alpha
Helix 60
60
C
138 150Right-handed alpha
Helix 61
61
C
164 175Right-handed alpha
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There are 5 sheets in PDB entry 3RYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1516 1521first strand
Strand 2
A
1500 1505anti-parallel
Strand 3
A
1595 1600parallel
Strand 4
A
1552 1558anti-parallel
Strand 5
A
1562 1566anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1500 1506first strand
Strand 2
B
1515 1521anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1564 1566first strand
Strand 2
B
1552 1557anti-parallel
Strand 3
B
1595 1600anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
50 57anti-parallel
Strand 3
C
3 8parallel
Strand 4
C
77 78parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
113 115parallel
Strand 3
C
155 156parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il