Analysis of interatomic Contacts of Structural Units in PDB entry:
3S3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S3J entry

There are 2 chains in PDB entry 3S3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 685
B
 VAL 279LEU 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3S3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
23 27Right-handed 310
Helix 3
3
A
152 160Right-handed alpha
Helix 4
4
A
188 199Right-handed alpha
Helix 5
5
A
200 206Right-handed alpha
Helix 6
6
A
206 214Right-handed alpha
Helix 7
7
A
216 228Right-handed alpha
Helix 8
8
A
257 267Right-handed alpha
Helix 9
9
A
276 292Right-handed alpha
Helix 10
10
A
310 318Right-handed alpha
Helix 11
11
A
376 382Right-handed alpha
Helix 12
12
A
389 398Right-handed alpha
Helix 13
13
A
439 444Right-handed alpha
Helix 14
14
A
449 460Right-handed alpha
Helix 15
15
A
547 552Right-handed alpha
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There are 9 sheets in PDB entry 3S3J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
99 105anti-parallel
Strand 4
A
89 95anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
126 138parallel
Strand 3
A
113 123anti-parallel
Strand 4
A
55 63anti-parallel
Strand 5
A
74 78anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 170first strand
Strand 2
A
175 181anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
272 275parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
353 357anti-parallel
Strand 3
A
334 342anti-parallel
Strand 4
A
295 304anti-parallel
Strand 5
A
420 429anti-parallel
Strand 6
A
436 438anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
400 404anti-parallel
Strand 3
A
574 583parallel
Strand 4
A
560 569anti-parallel
Strand 5
A
503 514anti-parallel
Strand 6
A
520 534anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 478first strand
Strand 2
A
489 497anti-parallel
Strand 3
A
538 546anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 594first strand
Strand 2
A
603 610anti-parallel
Strand 3
A
647 654anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 637first strand
Strand 2
A
621 625anti-parallel
Strand 3
A
662 669anti-parallel
Strand 4
A
676 682anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il