Analysis of interatomic Contacts of Structural Units in PDB entry:
3S5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S5H entry

There is 1 chain in PDB entry 3S5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 58GLU 1193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3S5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 65Right-handed 310
Helix 2
2
A
126 135Right-handed alpha
Helix 3
3
A
146 154Right-handed alpha
Helix 4
4
A
177 194Right-handed alpha
Helix 5
5
A
195 199Right-handed 310
Helix 6
6
A
200 208Right-handed alpha
Helix 7
7
A
238 248Right-handed alpha
Helix 8
8
A
250 264Right-handed alpha
Helix 9
9
A
267 271Right-handed 310
Helix 10
10
A
276 281Right-handed alpha
Helix 11
11
A
284 296Right-handed alpha
Helix 12
12
A
311 323Right-handed alpha
Helix 13
13
A
324 325Right-handed 310
Helix 14
14
A
326 330Right-handed 310
Helix 15
15
A
409 425Right-handed alpha
Helix 16
16
A
429 439Right-handed alpha
Helix 17
17
A
474 476Right-handed 310
Helix 18
18
A
477 497Right-handed alpha
Helix 19
19
A
499 518Right-handed alpha
Helix 20
20
A
522 536Right-handed alpha
Helix 21
21
A
546 561Right-handed alpha
Helix 22
22
A
563 573Right-handed alpha
Helix 23
23
A
589 609Right-handed alpha
Helix 24
24
A
610 630Right-handed alpha
Helix 25
25
A
633 638Right-handed alpha
Helix 26
26
A
644 648Right-handed 310
Helix 27
27
A
669 679Right-handed alpha
Helix 28
28
A
680 696Right-handed alpha
Helix 29
29
A
752 757Right-handed alpha
Helix 30
30
A
758 766Right-handed alpha
Helix 31
31
A
775 787Right-handed alpha
Helix 32
32
A
825 839Right-handed alpha
Helix 33
33
A
844 866Right-handed alpha
Helix 34
34
A
866 875Right-handed alpha
Helix 35
35
A
880 891Right-handed alpha
Helix 36
36
A
891 908Right-handed alpha
Helix 37
37
A
908 924Right-handed alpha
Helix 38
38
A
936 939Right-handed 310
Helix 39
39
A
940 945Right-handed alpha
Helix 40
40
A
947 961Right-handed alpha
Helix 41
41
A
962 965Right-handed 310
Helix 42
42
A
979 987Right-handed alpha
Helix 43
43
A
1024 1036Right-handed alpha
Helix 44
44
A
1036 1043Right-handed alpha
Helix 45
45
A
1071 1080Right-handed alpha
Helix 46
46
A
1080 1092Right-handed alpha
Helix 47
47
A
1093 1109Right-handed alpha
Helix 48
48
A
1114 1127Right-handed alpha
Helix 49
49
A
1130 1143Right-handed alpha
Helix 50
50
A
1145 1159Right-handed alpha
Helix 51
51
A
1159 1164Right-handed alpha
Helix 52
52
A
1172 1183Right-handed alpha
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There are 5 sheets in PDB entry 3S5H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 79first strand
Strand 2
A
84 91anti-parallel
Strand 3
A
97 102anti-parallel
Strand 4
A
302 307parallel
Strand 5
A
111 118anti-parallel
Strand 6
A
168 175anti-parallel
Strand 7
A
157 164anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 215first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
228 229anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 355first strand
Strand 2
A
579 587parallel
Strand 3
A
363 370anti-parallel
Strand 4
A
457 465anti-parallel
Strand 5
A
443 450anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 662first strand
Strand 2
A
727 733anti-parallel
Strand 3
A
929 935parallel
Strand 4
A
739 747anti-parallel
Strand 5
A
812 822anti-parallel
Strand 6
A
789 797anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1050 1055first strand
Strand 2
A
1060 1066anti-parallel
Strand 3
A
1008 1014anti-parallel
Strand 4
A
1166 1171anti-parallel
Strand 5
A
996 1001parallel
Strand 6
A
1188 1191parallel
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