Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3S8V entry

There are 3 chains in PDB entry 3S8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 629	CYS 1243
B	GLU 631	CYS 1243
X	GLN 184	ARG 265

There are 8 helices in PDB entry 3S8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	891	900	Right-handed 310
Helix 2	2	A	1198	1204	Right-handed alpha
Helix 3	3	A	1209	1214	Right-handed 310
Helix 4	4	B	891	900	Right-handed 310
Helix 5	5	B	1198	1204	Right-handed alpha
Helix 6	6	B	1209	1214	Right-handed 310
Helix 7	7	X	191	195	Right-handed 310
Helix 8	8	X	227	232	Right-handed alpha

There are 32 sheets in PDB entry 3S8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	655	first strand
Strand 2	A	642	646	anti-parallel
Strand 3	A	633	637	anti-parallel
Strand 4	A	877	882	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	670	first strand
Strand 2	A	675	680	anti-parallel
Strand 3	A	685	690	anti-parallel
Strand 4	A	697	700	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	713	first strand
Strand 2	A	718	723	anti-parallel
Strand 3	A	728	733	anti-parallel
Strand 4	A	740	743	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	756	first strand
Strand 2	A	761	766	anti-parallel
Strand 3	A	772	777	anti-parallel
Strand 4	A	784	787	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	799	first strand
Strand 2	A	804	809	anti-parallel
Strand 3	A	814	819	anti-parallel
Strand 4	A	826	829	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	835	840	first strand
Strand 2	A	844	849	anti-parallel
Strand 3	A	854	859	anti-parallel
Strand 4	A	867	870	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	903	906	first strand
Strand 2	A	912	915	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	921	922	first strand
Strand 2	A	929	930	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	957	958	first strand
Strand 2	A	944	948	anti-parallel
Strand 3	A	935	939	anti-parallel
Strand 4	A	1190	1194	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	966	973	first strand
Strand 2	A	978	984	anti-parallel
Strand 3	A	988	992	anti-parallel
Strand 4	A	1000	1003	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1016	1022	first strand
Strand 2	A	1027	1032	anti-parallel
Strand 3	A	1037	1042	anti-parallel
Strand 4	A	1047	1052	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1059	1065	first strand
Strand 2	A	1070	1075	anti-parallel
Strand 3	A	1082	1087	anti-parallel
Strand 4	A	1094	1097	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1104	1110	first strand
Strand 2	A	1115	1120	anti-parallel
Strand 3	A	1125	1130	anti-parallel
Strand 4	A	1137	1140	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1147	1152	first strand
Strand 2	A	1156	1161	anti-parallel
Strand 3	A	1166	1171	anti-parallel
Strand 4	A	1179	1182	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1217	1218	first strand
Strand 2	A	1228	1229	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	655	first strand
Strand 2	B	642	646	anti-parallel
Strand 3	B	633	637	anti-parallel
Strand 4	B	879	882	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	670	first strand
Strand 2	B	675	680	anti-parallel
Strand 3	B	685	690	anti-parallel
Strand 4	B	697	700	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	709	713	first strand
Strand 2	B	718	723	anti-parallel
Strand 3	B	728	733	anti-parallel
Strand 4	B	740	743	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	756	first strand
Strand 2	B	761	766	anti-parallel
Strand 3	B	772	777	anti-parallel
Strand 4	B	784	787	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	799	first strand
Strand 2	B	804	809	anti-parallel
Strand 3	B	814	819	anti-parallel
Strand 4	B	826	829	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	835	840	first strand
Strand 2	B	844	849	anti-parallel
Strand 3	B	854	859	anti-parallel
Strand 4	B	867	870	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	903	906	first strand
Strand 2	B	912	915	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	921	922	first strand
Strand 2	B	929	930	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	958	first strand
Strand 2	B	943	947	anti-parallel
Strand 3	B	935	940	anti-parallel
Strand 4	B	1188	1194	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	967	973	first strand
Strand 2	B	978	983	anti-parallel
Strand 3	B	988	992	anti-parallel
Strand 4	B	1000	1003	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1016	1022	first strand
Strand 2	B	1027	1032	anti-parallel
Strand 3	B	1037	1042	anti-parallel
Strand 4	B	1047	1053	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1059	1065	first strand
Strand 2	B	1070	1077	anti-parallel
Strand 3	B	1080	1087	anti-parallel
Strand 4	B	1094	1097	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1104	1110	first strand
Strand 2	B	1115	1120	anti-parallel
Strand 3	B	1125	1130	anti-parallel
Strand 4	B	1137	1140	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1147	1152	first strand
Strand 2	B	1156	1161	anti-parallel
Strand 3	B	1166	1171	anti-parallel
Strand 4	B	1179	1182	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1217	1220	first strand
Strand 2	B	1226	1229	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	199	204	first strand
Strand 2	X	207	212	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	244	247	first strand
Strand 2	X	261	264	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3S8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8V