Analysis of interatomic Contacts of Structural Units in PDB entry:
3SPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SPD entry

There are 8 chains in PDB entry 3SPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33MET 232
B
 SER 33MET 232
C
 SER 33MET 232
D
 SER 33MET 232
E
 T 1 A 14
F
 G 1 T 14
G
 T 1 A 14
H
 G 1 T 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3SPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 37Right-handed 310
Helix 2
2
A
38 44Right-handed alpha
Helix 3
3
A
45 48Right-handed 310
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
85 93Right-handed alpha
Helix 6
6
A
93 106Right-handed alpha
Helix 7
7
A
108 120Right-handed alpha
Helix 8
8
A
125 131Right-handed alpha
Helix 9
9
A
162 171Right-handed alpha
Helix 10
10
A
180 184Right-handed 310
Helix 11
11
A
190 196Right-handed 310
Helix 12
12
A
210 231Right-handed alpha
Helix 13
13
B
33 37Right-handed 310
Helix 14
14
B
38 44Right-handed alpha
Helix 15
15
B
45 48Right-handed 310
Helix 16
16
B
80 84Right-handed 310
Helix 17
17
B
85 93Right-handed alpha
Helix 18
18
B
93 106Right-handed alpha
Helix 19
19
B
108 120Right-handed alpha
Helix 20
20
B
125 131Right-handed alpha
Helix 21
21
B
162 171Right-handed alpha
Helix 22
22
B
180 184Right-handed 310
Helix 23
23
B
190 196Right-handed 310
Helix 24
24
B
210 231Right-handed alpha
Helix 25
25
C
33 37Right-handed 310
Helix 26
26
C
38 44Right-handed alpha
Helix 27
27
C
45 48Right-handed 310
Helix 28
28
C
80 84Right-handed 310
Helix 29
29
C
85 93Right-handed alpha
Helix 30
30
C
93 106Right-handed alpha
Helix 31
31
C
108 120Right-handed alpha
Helix 32
32
C
125 131Right-handed alpha
Helix 33
33
C
162 171Right-handed alpha
Helix 34
34
C
180 184Right-handed 310
Helix 35
35
C
190 196Right-handed 310
Helix 36
36
C
210 231Right-handed alpha
Helix 37
37
D
33 37Right-handed 310
Helix 38
38
D
38 44Right-handed alpha
Helix 39
39
D
45 48Right-handed 310
Helix 40
40
D
80 84Right-handed 310
Helix 41
41
D
85 93Right-handed alpha
Helix 42
42
D
93 106Right-handed alpha
Helix 43
43
D
108 120Right-handed alpha
Helix 44
44
D
125 131Right-handed alpha
Helix 45
45
D
162 171Right-handed alpha
Helix 46
46
D
180 184Right-handed 310
Helix 47
47
D
190 196Right-handed 310
Helix 48
48
D
210 230Right-handed alpha
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There are 8 sheets in PDB entry 3SPD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
58 62anti-parallel
Strand 3
A
71 76anti-parallel
Strand 4
A
148 152anti-parallel
Strand 5
A
133 138anti-parallel
Strand 6
A
174 176anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
206 208anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
58 62anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
148 152anti-parallel
Strand 5
B
133 138anti-parallel
Strand 6
B
174 176anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
B
206 208anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 54first strand
Strand 2
C
58 62anti-parallel
Strand 3
C
71 76anti-parallel
Strand 4
C
148 152anti-parallel
Strand 5
C
133 138anti-parallel
Strand 6
C
174 176anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 199first strand
Strand 2
C
206 208anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 54first strand
Strand 2
D
58 62anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
148 152anti-parallel
Strand 5
D
133 138anti-parallel
Strand 6
D
174 176anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 199first strand
Strand 2
D
206 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il