Analysis of interatomic Contacts of Structural Units in PDB entry:
3SU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SU8 entry

There are 2 chains in PDB entry 3SU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LYS 178
X
GLY 1560GLU 2129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3SU8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
A
61 65Right-handed 310
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
86 96Right-handed alpha
Helix 5
5
A
96 105Right-handed alpha
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
138 149Right-handed alpha
Helix 8
8
A
164 178Right-handed alpha
Helix 9
9
X
1567 1577Right-handed alpha
Helix 10
10
X
1595 1611Right-handed alpha
Helix 11
11
X
1612 1625Right-handed alpha
Helix 12
12
X
1630 1645Right-handed alpha
Helix 13
13
X
1648 1670Right-handed alpha
Helix 14
14
X
1671 1675Right-handed 310
Helix 15
15
X
1681 1702Right-handed alpha
Helix 16
16
X
1703 1719Right-handed alpha
Helix 17
17
X
1735 1739Right-handed 310
Helix 18
18
X
1776 1789Right-handed alpha
Helix 19
19
X
1799 1801Right-handed 310
Helix 20
20
X
1835 1840Right-handed alpha
Helix 21
21
X
1915 1929Right-handed alpha
Helix 22
22
X
1929 1941Right-handed alpha
Helix 23
23
X
1948 1965Right-handed alpha
Helix 24
24
X
1969 1979Right-handed alpha
Helix 25
25
X
1985 1992Right-handed alpha
Helix 26
26
X
1993 1996Right-handed 310
Helix 27
27
X
2002 2021Right-handed alpha
Helix 28
28
X
2032 2038Right-handed alpha
Helix 29
29
X
2041 2059Right-handed alpha
Helix 30
30
X
2063 2078Right-handed alpha
Helix 31
31
X
2083 2098Right-handed alpha
Helix 32
32
X
2098 2109Right-handed alpha
Helix 33
33
X
2109 2116Right-handed alpha
Helix 34
34
X
2116 2129Right-handed alpha
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There are 3 sheets in PDB entry 3SU8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 46first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
2 10parallel
Strand 4
A
77 83parallel
Strand 5
A
110 115parallel
Strand 6
A
153 156parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
1767 1772first strand
Strand 2
X
1748 1755anti-parallel
Strand 3
X
1846 1851parallel
Strand 4
X
1803 1808anti-parallel
Strand 5
X
1815 1817anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
1825 1827first strand
Strand 2
X
1830 1832anti-parallel
Strand 3
X
1882 1884parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il