Analysis of interatomic Contacts of Structural Units in PDB entry:
3SXS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SXS entry

There is 1 chain in PDB entry 3SXS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 408GLU 671
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3SXS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
413 415Right-handed 310
Helix 2
2
A
453 467Right-handed alpha
Helix 3
3
A
496 505Right-handed alpha
Helix 4
4
A
506 508Right-handed 310
Helix 5
5
A
509 530Right-handed alpha
Helix 6
6
A
538 540Right-handed 310
Helix 7
7
A
575 579Right-handed 310
Helix 8
8
A
580 587Right-handed alpha
Helix 9
9
A
592 607Right-handed alpha
Helix 10
10
A
617 627Right-handed alpha
Helix 11
11
A
638 648Right-handed alpha
Helix 12
12
A
652 656Right-handed 310
Helix 13
13
A
658 667Right-handed alpha
Helix 14
14
A
668 670Right-handed 310
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There are 4 sheets in PDB entry 3SXS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
417 426first strand
Strand 2
A
429 436anti-parallel
Strand 3
A
440 447anti-parallel
Strand 4
A
485 490anti-parallel
Strand 5
A
475 479anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
532 534first strand
Strand 2
A
558 560anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
542 544first strand
Strand 2
A
550 552anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
566 568first strand
Strand 2
A
588 590anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il