Analysis of interatomic Contacts of Structural Units in PDB entry:
3TB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TB6 entry

There are 2 chains in PDB entry 3TB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 79ASN 361
B
 LYS 80GLU 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3TB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 108Right-handed alpha
Helix 2
2
A
120 134Right-handed alpha
Helix 3
3
A
152 162Right-handed alpha
Helix 4
4
A
184 199Right-handed alpha
Helix 5
5
A
212 229Right-handed alpha
Helix 6
6
A
234 236Right-handed 310
Helix 7
7
A
242 247Right-handed alpha
Helix 8
8
A
248 261Right-handed alpha
Helix 9
9
A
273 287Right-handed alpha
Helix 10
10
A
304 309Right-handed alpha
Helix 11
11
A
320 336Right-handed alpha
Helix 12
12
B
93 108Right-handed alpha
Helix 13
13
B
120 133Right-handed alpha
Helix 14
14
B
152 162Right-handed alpha
Helix 15
15
B
184 199Right-handed alpha
Helix 16
16
B
212 229Right-handed alpha
Helix 17
17
B
234 236Right-handed 310
Helix 18
18
B
242 246Right-handed 310
Helix 19
19
B
248 261Right-handed alpha
Helix 20
20
B
262 265Right-handed 310
Helix 21
21
B
273 287Right-handed alpha
Helix 22
22
B
304 309Right-handed alpha
Helix 23
23
B
320 336Right-handed alpha
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There are 6 sheets in PDB entry 3TB6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
81 86parallel
Strand 3
A
138 141parallel
Strand 4
A
166 169parallel
Strand 5
A
180 183parallel
Strand 6
A
345 347parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
204 209parallel
Strand 3
A
268 270parallel
Strand 4
A
296 298parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
350 352anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
81 86parallel
Strand 3
B
138 141parallel
Strand 4
B
166 169parallel
Strand 5
B
180 183parallel
Strand 6
B
345 347parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
204 209parallel
Strand 3
B
268 271parallel
Strand 4
B
296 298parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
351 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il