Analysis of interatomic Contacts of Structural Units in PDB entry:
3TF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TF0 entry

There are 2 chains in PDB entry 3TF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 186
B
 MET 1ASN 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3TF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
18 29Right-handed alpha
Helix 3
3
A
44 60Right-handed alpha
Helix 4
4
A
62 82Right-handed alpha
Helix 5
5
A
83 86Right-handed 310
Helix 6
6
A
90 105Right-handed alpha
Helix 7
7
A
137 153Right-handed alpha
Helix 8
8
B
2 18Right-handed alpha
Helix 9
9
B
18 29Right-handed alpha
Helix 10
10
B
44 60Right-handed alpha
Helix 11
11
B
62 82Right-handed alpha
Helix 12
12
B
83 86Right-handed 310
Helix 13
13
B
90 97Right-handed alpha
Helix 14
14
B
97 107Right-handed alpha
Helix 15
15
B
137 153Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3TF0.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 123first strand
Strand 2
A
126 133anti-parallel
Strand 3
A
169 178anti-parallel
Strand 4
A
156 166anti-parallel
Strand 5
B
156 166anti-parallel
Strand 6
B
169 178anti-parallel
Strand 7
B
126 133anti-parallel
Strand 8
B
116 123anti-parallel
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