Analysis of interatomic Contacts of Structural Units in PDB entry:
3TII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TII entry

There are 2 chains in PDB entry 3TII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2LEU 377
B
 GLY -2LEU 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 3TII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
68 73Right-handed alpha
Helix 4
4
A
73 84Right-handed alpha
Helix 5
5
A
127 141Right-handed alpha
Helix 6
6
A
165 176Right-handed alpha
Helix 7
7
A
264 271Right-handed alpha
Helix 8
8
A
282 303Right-handed alpha
Helix 9
9
A
342 354Right-handed alpha
Helix 10
10
B
11 23Right-handed alpha
Helix 11
11
B
48 52Right-handed 310
Helix 12
12
B
67 71Right-handed 310
Helix 13
13
B
73 84Right-handed alpha
Helix 14
14
B
127 141Right-handed alpha
Helix 15
15
B
165 171Right-handed alpha
Helix 16
16
B
263 272Right-handed alpha
Helix 17
17
B
283 303Right-handed alpha
Helix 18
18
B
339 341Right-handed 310
Helix 19
19
B
342 354Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3TII. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
2 6parallel
Strand 3
A
39 41parallel
Strand 4
A
61 62parallel
Strand 5
A
310 311parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
180 184anti-parallel
Strand 3
A
147 151anti-parallel
Strand 4
A
161 163anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
220 221anti-parallel
Strand 3
A
201 207anti-parallel
Strand 4
A
313 321anti-parallel
Strand 5
A
327 333anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
220 221anti-parallel
Strand 3
A
201 207anti-parallel
Strand 4
A
213 216anti-parallel
Strand 5
A
374 376anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
2 6parallel
Strand 3
B
39 41parallel
Strand 4
B
61 62parallel
Strand 5
B
310 311parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
180 184anti-parallel
Strand 3
B
147 151anti-parallel
Strand 4
B
161 163anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
220 223anti-parallel
Strand 3
B
199 207anti-parallel
Strand 4
B
313 321anti-parallel
Strand 5
B
327 333anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
220 223anti-parallel
Strand 3
B
199 207anti-parallel
Strand 4
B
213 216anti-parallel
Strand 5
B
374 376anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il