Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJF entry

There are 5 chains in PDB entry 3TJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 75LYS 269
B
HIS 75LYS 269
C
LEU 74LYS 269
D
HIS 75ASP 268
E
SER 73ASP 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3TJF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
104 107Right-handed 310
Helix 2
2
A
122 134Right-handed alpha
Helix 3
3
A
134 140Right-handed alpha
Helix 4
4
A
152 161Right-handed alpha
Helix 5
5
A
163 167Right-handed 310
Helix 6
6
A
182 188Right-handed alpha
Helix 7
7
A
224 241Right-handed alpha
Helix 8
8
A
262 268Right-handed alpha
Helix 9
9
B
104 107Right-handed 310
Helix 10
10
B
122 134Right-handed alpha
Helix 11
11
B
134 140Right-handed alpha
Helix 12
12
B
152 161Right-handed alpha
Helix 13
13
B
163 167Right-handed 310
Helix 14
14
B
182 188Right-handed alpha
Helix 15
15
B
224 241Right-handed alpha
Helix 16
16
B
263 268Right-handed alpha
Helix 17
17
C
104 107Right-handed 310
Helix 18
18
C
122 134Right-handed alpha
Helix 19
19
C
134 140Right-handed alpha
Helix 20
20
C
152 161Right-handed alpha
Helix 21
21
C
163 167Right-handed 310
Helix 22
22
C
182 188Right-handed alpha
Helix 23
23
C
224 241Right-handed alpha
Helix 24
24
C
262 268Right-handed alpha
Helix 25
25
D
104 107Right-handed 310
Helix 26
26
D
122 134Right-handed alpha
Helix 27
27
D
134 140Right-handed alpha
Helix 28
28
D
152 161Right-handed alpha
Helix 29
29
D
163 167Right-handed 310
Helix 30
30
D
182 188Right-handed alpha
Helix 31
31
D
224 241Right-handed alpha
Helix 32
32
D
263 268Right-handed alpha
Helix 33
33
E
104 107Right-handed 310
Helix 34
34
E
122 134Right-handed alpha
Helix 35
35
E
134 140Right-handed alpha
Helix 36
36
E
152 161Right-handed alpha
Helix 37
37
E
163 167Right-handed 310
Helix 38
38
E
182 188Right-handed alpha
Helix 39
39
E
224 241Right-handed alpha
Helix 40
40
E
263 268Right-handed alpha
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There are 4 sheets in PDB entry 3TJF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 102first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
143 149parallel
Strand 5
A
110 115parallel
Strand 6
A
200 205anti-parallel
Strand 7
A
211 217anti-parallel
Strand 8
B
211 217anti-parallel
Strand 9
B
200 205anti-parallel
Strand 10
B
110 115anti-parallel
Strand 11
B
143 149parallel
Strand 12
B
176 178parallel
Strand 13
B
89 94anti-parallel
Strand 14
B
97 102anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
75 76first strand
Strand 2
D
76 77anti-parallel
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There are 14 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
97 102first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
176 178anti-parallel
Strand 4
C
143 149parallel
Strand 5
C
110 115parallel
Strand 6
C
200 205anti-parallel
Strand 7
C
211 217anti-parallel
Strand 8
D
211 217anti-parallel
Strand 9
D
200 205anti-parallel
Strand 10
D
110 115anti-parallel
Strand 11
D
143 149parallel
Strand 12
D
176 178parallel
Strand 13
D
89 94anti-parallel
Strand 14
D
97 102anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
97 102first strand
Strand 2
E
89 94anti-parallel
Strand 3
E
176 178anti-parallel
Strand 4
E
143 149parallel
Strand 5
E
110 115parallel
Strand 6
E
200 205anti-parallel
Strand 7
E
211 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il