Analysis of interatomic Contacts of Structural Units in PDB entry:
3TLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TLM entry

There is 1 chain in PDB entry 3TLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 992
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3TLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 17Right-handed alpha
Helix 2
2
A
25 37Right-handed alpha
Helix 3
3
A
59 79Right-handed alpha
Helix 4
4
A
88 121Right-handed alpha
Helix 5
5
A
143 145Right-handed 310
Helix 6
6
A
200 204Right-handed 310
Helix 7
7
A
247 274Right-handed alpha
Helix 8
8
A
287 307Right-handed alpha
Helix 9
9
A
310 329Right-handed alpha
Helix 10
10
A
337 343Right-handed alpha
Helix 11
11
A
403 406Right-handed 310
Helix 12
12
A
407 420Right-handed alpha
Helix 13
13
A
439 453Right-handed alpha
Helix 14
14
A
463 468Right-handed alpha
Helix 15
15
A
469 477Right-handed alpha
Helix 16
16
A
516 523Right-handed alpha
Helix 17
17
A
537 553Right-handed alpha
Helix 18
18
A
571 575Right-handed 310
Helix 19
19
A
579 581Right-handed 310
Helix 20
20
A
582 587Right-handed alpha
Helix 21
21
A
605 616Right-handed alpha
Helix 22
22
A
627 639Right-handed alpha
Helix 23
23
A
654 660Right-handed alpha
Helix 24
24
A
661 672Right-handed alpha
Helix 25
25
A
681 692Right-handed alpha
Helix 26
26
A
703 705Right-handed 310
Helix 27
27
A
706 713Right-handed alpha
Helix 28
28
A
723 730Right-handed alpha
Helix 29
29
A
739 775Right-handed alpha
Helix 30
30
A
787 799Right-handed alpha
Helix 31
31
A
800 805Right-handed alpha
Helix 32
32
A
806 809Right-handed 310
Helix 33
33
A
814 818Right-handed 310
Helix 34
34
A
829 845Right-handed alpha
Helix 35
35
A
848 856Right-handed alpha
Helix 36
36
A
888 892Right-handed 310
Helix 37
37
A
893 912Right-handed alpha
Helix 38
38
A
913 915Right-handed 310
Helix 39
39
A
925 928Right-handed 310
Helix 40
40
A
929 949Right-handed alpha
Helix 41
41
A
952 956Right-handed 310
Helix 42
42
A
964 974Right-handed alpha
Helix 43
43
A
974 988Right-handed alpha
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There are 6 sheets in PDB entry 3TLM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
213 216anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
732 734anti-parallel
Strand 3
A
715 719parallel
Strand 4
A
697 701parallel
Strand 5
A
347 351parallel
Strand 6
A
619 623parallel
Strand 7
A
674 676parallel
Strand 8
A
652 653parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
590 599anti-parallel
Strand 6
A
559 566anti-parallel
Strand 7
A
510 515anti-parallel
Strand 8
A
493 500anti-parallel
Strand 9
A
479 485anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
590 599anti-parallel
Strand 6
A
524 529parallel
Strand 7
A
532 535anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
433 437anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il