Analysis of interatomic Contacts of Structural Units in PDB entry:
3TMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TMP entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 3TMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 173ASN 176
A
 GLU 178PRO 341
B
 MET 1GLY 75
C
 HIS 170ASN 176
C
 GLU 178PRO 341
D
 MET 1GLY 75
E
 GLY 168ASN 176
E
 GLU 178ASN 340
F
 MET 1GLY 75
G
 ALA 173ASN 176
G
 GLU 178PRO 341
H
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 3TMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
177 179Right-handed 310
Helix 2
2
A
180 187Right-handed alpha
Helix 3
3
A
193 212Right-handed alpha
Helix 4
4
A
223 235Right-handed alpha
Helix 5
5
A
236 238Right-handed 310
Helix 6
6
A
239 254Right-handed alpha
Helix 7
7
A
254 259Right-handed alpha
Helix 8
8
A
260 262Right-handed 310
Helix 9
9
A
265 274Right-handed alpha
Helix 10
10
A
281 293Right-handed alpha
Helix 11
11
B
22 35Right-handed alpha
Helix 12
12
B
37 39Right-handed 310
Helix 13
13
B
56 60Right-handed 310
Helix 14
14
C
177 181Right-handed 310
Helix 15
15
C
185 191Right-handed alpha
Helix 16
16
C
192 212Right-handed alpha
Helix 17
17
C
223 235Right-handed alpha
Helix 18
18
C
236 238Right-handed 310
Helix 19
19
C
239 254Right-handed alpha
Helix 20
20
C
254 259Right-handed alpha
Helix 21
21
C
260 262Right-handed 310
Helix 22
22
C
265 274Right-handed alpha
Helix 23
23
C
281 292Right-handed alpha
Helix 24
24
D
22 35Right-handed alpha
Helix 25
25
D
37 39Right-handed 310
Helix 26
26
D
56 60Right-handed 310
Helix 27
27
E
177 179Right-handed 310
Helix 28
28
E
180 189Right-handed alpha
Helix 29
29
E
192 212Right-handed alpha
Helix 30
30
E
223 235Right-handed alpha
Helix 31
31
E
236 238Right-handed 310
Helix 32
32
E
239 254Right-handed alpha
Helix 33
33
E
254 259Right-handed alpha
Helix 34
34
E
260 262Right-handed 310
Helix 35
35
E
265 274Right-handed alpha
Helix 36
36
E
281 292Right-handed alpha
Helix 37
37
F
22 35Right-handed alpha
Helix 38
38
F
37 39Right-handed 310
Helix 39
39
F
56 60Right-handed 310
Helix 40
40
G
177 181Right-handed 310
Helix 41
41
G
196 212Right-handed alpha
Helix 42
42
G
223 235Right-handed alpha
Helix 43
43
G
236 238Right-handed 310
Helix 44
44
G
239 254Right-handed alpha
Helix 45
45
G
254 259Right-handed alpha
Helix 46
46
G
260 262Right-handed 310
Helix 47
47
G
265 274Right-handed alpha
Helix 48
48
G
281 293Right-handed alpha
Helix 49
49
H
22 35Right-handed alpha
Helix 50
50
H
37 39Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3TMP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
325 330anti-parallel
Strand 4
A
296 299parallel
Strand 5
A
312 314anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 216first strand
Strand 2
C
334 339anti-parallel
Strand 3
C
325 330anti-parallel
Strand 4
C
296 299parallel
Strand 5
C
312 314anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
214 216first strand
Strand 2
E
334 339anti-parallel
Strand 3
E
325 330anti-parallel
Strand 4
E
296 299parallel
Strand 5
E
312 314anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 6anti-parallel
Strand 3
F
66 71parallel
Strand 4
F
41 45anti-parallel
Strand 5
F
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
214 216first strand
Strand 2
G
334 339anti-parallel
Strand 3
G
325 330anti-parallel
Strand 4
G
296 299parallel
Strand 5
G
312 314anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 16first strand
Strand 2
H
2 7anti-parallel
Strand 3
H
66 71parallel
Strand 4
H
41 45anti-parallel
Strand 5
H
48 49anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il